Strain Fitness in Pseudomonas putida KT2440 around PP_5361

Experiment: L-Glutamine (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Glutamine (C)
6,109,485	+		PP_5359	0.84	-0.5
6,109,528	-		PP_5359	0.89	-0.4
6,109,611	+				-0.3
6,109,611	+				-0.1
6,109,611	+				-0.0
6,109,612	-				-0.0
6,109,612	-				-0.6
6,109,612	-				+0.3
6,109,669	+				-1.1
6,109,669	+				+0.1
6,109,670	-				+0.7
6,109,779	+		PP_5360	0.16	+0.1
6,109,779	+		PP_5360	0.16	-0.5
6,109,780	-		PP_5360	0.16	+0.4
6,109,780	-		PP_5360	0.16	+0.2
6,109,780	-		PP_5360	0.16	-0.4
6,109,780	-		PP_5360	0.16	+0.7
6,109,783	+		PP_5360	0.17	+0.7
6,109,783	+		PP_5360	0.17	+0.4
6,109,784	-		PP_5360	0.17	-0.5
6,109,843	+		PP_5360	0.26	-0.2
6,109,843	+		PP_5360	0.26	+0.9
6,109,861	-		PP_5360	0.29	+0.3
6,109,884	+		PP_5360	0.33	+0.5
6,109,885	-		PP_5360	0.33	-0.5
6,109,885	-		PP_5360	0.33	-1.5
6,109,898	+		PP_5360	0.35	+0.0
6,109,898	+		PP_5360	0.35	+0.1
6,109,898	+		PP_5360	0.35	+0.5
6,109,899	-		PP_5360	0.35	-0.4
6,109,899	-		PP_5360	0.35	+0.9
6,109,921	+		PP_5360	0.39	+0.9
6,109,922	-		PP_5360	0.39	+0.7
6,109,922	-		PP_5360	0.39	+0.3
6,110,007	+		PP_5360	0.52	+1.7
6,110,007	+		PP_5360	0.52	-0.2
6,110,007	+		PP_5360	0.52	+0.1
6,110,007	+		PP_5360	0.52	+0.0
6,110,007	+		PP_5360	0.52	+0.1
6,110,007	+		PP_5360	0.52	-0.8
6,110,007	+		PP_5360	0.52	-0.2
6,110,007	+		PP_5360	0.52	+0.5
6,110,007	+		PP_5360	0.52	+0.2
6,110,007	+		PP_5360	0.52	-0.1
6,110,007	+		PP_5360	0.52	-0.7
6,110,007	+		PP_5360	0.52	-0.2
6,110,008	-		PP_5360	0.53	+0.6
6,110,008	-		PP_5360	0.53	+0.8
6,110,009	+		PP_5360	0.53	+1.5
6,110,009	+		PP_5360	0.53	+0.7
6,110,009	+		PP_5360	0.53	-0.1
6,110,009	+		PP_5360	0.53	+0.3
6,110,009	+		PP_5360	0.53	+0.4
6,110,009	+		PP_5360	0.53	+0.0
6,110,009	+		PP_5360	0.53	+0.7
6,110,010	-		PP_5360	0.53	-0.1
6,110,010	-		PP_5360	0.53	+0.2
6,110,010	-		PP_5360	0.53	-0.1
6,110,010	-		PP_5360	0.53	+0.4
6,110,010	-		PP_5360	0.53	-0.0
6,110,038	+		PP_5360	0.57	+0.7
6,110,039	-		PP_5360	0.58	+0.3
6,110,039	-		PP_5360	0.58	-0.4
6,110,039	-		PP_5360	0.58	+0.2
6,110,051	+		PP_5360	0.59	+1.0
6,110,052	-		PP_5360	0.60	-0.4
6,110,052	-		PP_5360	0.60	+0.0
6,110,343	+				-1.2
6,110,343	+				-0.8
6,110,444	+		PP_5361	0.12	+0.8
6,110,445	-		PP_5361	0.12	+0.1
6,110,617	+		PP_5361	0.26	+1.3
6,110,617	+		PP_5361	0.26	+0.6
6,110,618	-		PP_5361	0.26	+0.5
6,110,655	+		PP_5361	0.29	+0.8
6,110,655	+		PP_5361	0.29	+0.8
6,110,684	+		PP_5361	0.32	+1.1
6,110,749	+		PP_5361	0.37	-0.1
6,110,750	-		PP_5361	0.37	+0.4
6,110,766	+		PP_5361	0.38	+0.2
6,110,767	-		PP_5361	0.39	+0.4
6,110,767	-		PP_5361	0.39	+0.5
6,110,767	-		PP_5361	0.39	+0.3
6,110,767	-		PP_5361	0.39	+1.3
6,110,767	-		PP_5361	0.39	+1.1
6,110,846	+		PP_5361	0.45	+1.2
6,110,846	+		PP_5361	0.45	+0.9
6,110,846	+		PP_5361	0.45	+1.1
6,110,846	+		PP_5361	0.45	+1.3
6,110,846	+		PP_5361	0.45	+0.8
6,110,846	+		PP_5361	0.45	+0.9
6,110,847	-		PP_5361	0.45	+1.5
6,110,847	-		PP_5361	0.45	+0.6
6,110,880	+		PP_5361	0.48	+1.0
6,110,881	-		PP_5361	0.48	+0.4
6,110,881	-		PP_5361	0.48	+0.7
6,110,915	+		PP_5361	0.51	+1.1
6,111,076	+		PP_5361	0.64	+1.1
6,111,077	-		PP_5361	0.64	+0.8
6,111,077	-		PP_5361	0.64	-0.3
6,111,203	+		PP_5361	0.75	+0.5
6,111,226	+		PP_5361	0.77	+1.1
6,111,389	+				+0.2
6,111,390	-				-0.3
6,111,390	-				+0.9
6,111,390	-				-0.0
6,111,403	-				+0.7
6,111,562	-				-0.0
6,111,655	+				+0.1
6,111,759	+				+0.4
6,111,760	-		PP_5362	0.36	+0.5
6,111,762	+		PP_5362	0.36	+0.0
6,111,762	+		PP_5362	0.36	-0.0
6,111,762	+		PP_5362	0.36	-0.5
6,111,762	+		PP_5362	0.36	+0.2
6,111,762	+		PP_5362	0.36	+1.6
6,111,762	+		PP_5362	0.36	-0.1
6,111,762	+		PP_5362	0.36	+0.8
6,111,762	+		PP_5362	0.36	+0.6
6,111,763	-		PP_5362	0.36	-0.7
6,111,763	-		PP_5362	0.36	+0.9
6,111,763	-		PP_5362	0.36	+0.7
6,111,763	-		PP_5362	0.36	+1.7
6,111,763	-		PP_5362	0.36	-0.1
6,111,763	-		PP_5362	0.36	-1.2
6,111,763	-		PP_5362	0.36	+0.1
6,111,773	+		PP_5362	0.39	+0.5
6,111,774	-		PP_5362	0.39	+0.1
6,111,792	+		PP_5362	0.44	+0.4
6,111,793	-		PP_5362	0.44	-0.3
6,111,793	-		PP_5362	0.44	-0.2
6,111,793	-		PP_5362	0.44	-0.1
6,111,793	-		PP_5362	0.44	-0.3
6,111,793	-		PP_5362	0.44	+0.5
6,111,793	-		PP_5362	0.44	-0.3
6,111,793	-		PP_5362	0.44	-1.6
6,111,793	-		PP_5362	0.44	+0.2
6,111,793	-		PP_5362	0.44	-0.1
6,112,042	+				-0.2
6,112,042	+				+0.0
6,112,042	+				-1.6
6,112,042	+				+0.4
6,112,049	+				+0.3
6,112,049	+				+0.0
6,112,114	+				+1.5
6,112,114	+				+0.9
6,112,114	+				+0.1
6,112,114	+				+1.2
6,112,115	-				-0.5
6,112,168	-				+0.4
6,112,206	+				-0.3
6,112,206	+				+0.2
6,112,207	-				+0.6
6,112,354	+		PP_5363	0.26	-0.7
6,112,354	+		PP_5363	0.26	+0.9
6,112,354	+		PP_5363	0.26	-0.4
6,112,355	-		PP_5363	0.26	-0.2
6,112,355	-		PP_5363	0.26	+0.6
6,112,355	-		PP_5363	0.26	-0.3
6,112,355	-		PP_5363	0.26	+0.2
6,112,409	-		PP_5363	0.36	+0.9