Experiment: L-Glutamine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_4988 and PP_4989 are separated by 12 nucleotides PP_4989 and PP_4990 are separated by 11 nucleotides PP_4990 and PP_4991 overlap by 4 nucleotides PP_4991 and PP_4992 are separated by 47 nucleotides
PP_4988: PP_4988 - signal transduction histidine kinase CheA/CheY-like receiver, at 5,681,952 to 5,686,892
_4988
PP_4989: PP_4989 - Protein PilJ, at 5,686,905 to 5,688,965
_4989
PP_4990: PP_4990 - Protein PilI, at 5,688,977 to 5,689,531
_4990
PP_4991: PP_4991 - Protein PilH, at 5,689,528 to 5,689,893
_4991
PP_4992: PP_4992 - Protein PilG, at 5,689,941 to 5,690,342
_4992
Position (kb) 5686
5687
5688
5689 Strain fitness (log2 ratio) -1
0
1
2 at 5686.088 kb on - strand, within PP_4988 at 5686.878 kb on + strand at 5686.879 kb on - strand at 5686.900 kb on - strand at 5687.112 kb on + strand, within PP_4989 at 5687.114 kb on + strand at 5687.256 kb on - strand, within PP_4989 at 5687.594 kb on - strand, within PP_4989 at 5687.791 kb on + strand, within PP_4989 at 5687.792 kb on - strand, within PP_4989 at 5688.013 kb on + strand, within PP_4989 at 5688.014 kb on - strand, within PP_4989 at 5688.014 kb on - strand, within PP_4989 at 5688.670 kb on + strand, within PP_4989 at 5688.671 kb on - strand, within PP_4989 at 5688.805 kb on + strand at 5688.805 kb on + strand at 5688.806 kb on - strand at 5688.806 kb on - strand at 5688.831 kb on - strand at 5688.839 kb on - strand at 5688.978 kb on + strand at 5688.979 kb on - strand at 5688.979 kb on - strand at 5688.979 kb on - strand at 5688.981 kb on - strand at 5689.328 kb on - strand, within PP_4990 at 5689.668 kb on + strand, within PP_4991 at 5689.851 kb on - strand, within PP_4991 at 5689.916 kb on - strand at 5689.916 kb on - strand at 5689.916 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Glutamine (C) remove 5,686,088 - PP_4988 0.84 +0.9 5,686,878 + +0.1 5,686,879 - +0.5 5,686,900 - -0.4 5,687,112 + PP_4989 0.10 +1.3 5,687,114 + +1.3 5,687,256 - PP_4989 0.17 +0.2 5,687,594 - PP_4989 0.33 +0.7 5,687,791 + PP_4989 0.43 -0.1 5,687,792 - PP_4989 0.43 +1.9 5,688,013 + PP_4989 0.54 +0.9 5,688,014 - PP_4989 0.54 +1.2 5,688,014 - PP_4989 0.54 +1.5 5,688,670 + PP_4989 0.86 +1.9 5,688,671 - PP_4989 0.86 -0.9 5,688,805 + +0.3 5,688,805 + +1.9 5,688,806 - +1.5 5,688,806 - +0.3 5,688,831 - -0.3 5,688,839 - +0.5 5,688,978 + -0.9 5,688,979 - -0.0 5,688,979 - -0.2 5,688,979 - +0.4 5,688,981 - +0.3 5,689,328 - PP_4990 0.63 +0.2 5,689,668 + PP_4991 0.38 +0.5 5,689,851 - PP_4991 0.88 +1.9 5,689,916 - -0.1 5,689,916 - -0.5 5,689,916 - -0.9
Or see this region's nucleotide sequence