Strain Fitness in Pseudomonas putida KT2440 around PP_3691

Experiment: L-Glutamine (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Glutamine (C)
4,200,165	+		PP_3690	0.34	-0.1
4,200,165	+		PP_3690	0.34	-0.6
4,200,165	+		PP_3690	0.34	-0.5
4,200,166	-		PP_3690	0.34	-0.1
4,200,166	-		PP_3690	0.34	+0.1
4,200,192	+		PP_3690	0.36	-0.0
4,200,279	-		PP_3690	0.43	+0.5
4,200,439	-		PP_3690	0.55	-0.0
4,200,614	+		PP_3690	0.68	+0.1
4,200,615	-		PP_3690	0.68	+0.2
4,200,615	-		PP_3690	0.68	+0.1
4,200,617	-		PP_3690	0.68	+0.2
4,200,617	-		PP_3690	0.68	-0.1
4,200,617	-		PP_3690	0.68	-0.2
4,200,617	-		PP_3690	0.68	+0.2
4,200,713	-		PP_3690	0.75	-0.4
4,200,716	+		PP_3690	0.76	+0.8
4,200,717	-		PP_3690	0.76	-0.1
4,200,726	-		PP_3690	0.76	-1.6
4,200,726	-		PP_3690	0.76	-0.5
4,200,801	+		PP_3690	0.82	-0.7
4,200,802	-		PP_3690	0.82	-0.2
4,200,802	-		PP_3690	0.82	+0.6
4,200,831	-		PP_3690	0.84	-0.6
4,200,833	+		PP_3690	0.85	-1.8
4,200,834	-		PP_3690	0.85	+0.7
4,200,834	-		PP_3690	0.85	-0.0
4,200,849	-		PP_3690	0.86	-0.4
4,200,861	+		PP_3690	0.87	-1.3
4,200,861	+		PP_3690	0.87	+0.3
4,200,861	+		PP_3690	0.87	-0.0
4,200,862	-		PP_3690	0.87	-0.1
4,200,926	+				+0.0
4,200,974	+				-0.0
4,201,048	+				-0.5
4,201,049	-				-0.0
4,201,049	-				+0.7
4,201,085	+				-0.2
4,201,150	+				+0.1
4,201,185	-				-0.6
4,201,241	-				+1.5
4,201,552	-				+0.2
4,201,552	-				-0.1
4,201,552	-				+0.2
4,201,552	-				+0.9
4,201,552	-				+0.7
4,201,552	-				-0.0
4,201,583	+				+0.2
4,201,583	+				-0.7
4,201,583	+				+0.3
4,201,583	+				+0.2
4,201,584	-				-1.2
4,201,584	-				+0.5
4,201,584	-				+1.6
4,201,584	-				+1.3
4,201,584	-				+0.4
4,201,584	-				+0.8
4,201,584	-				+0.5
4,201,585	+				+0.2
4,201,585	+				+0.8
4,201,585	+				+0.5
4,201,585	+				-0.0
4,201,585	+				+0.8
4,201,586	-				-0.1
4,201,586	-				+0.4
4,201,586	-				+0.2
4,201,586	-				+0.5
4,201,586	-				+0.2
4,201,586	-				+0.2
4,201,634	+				+0.5
4,201,652	-				+0.1
4,201,675	+				+0.4
4,201,675	+				+0.6
4,201,676	-				+1.4
4,201,676	-				+0.1
4,201,676	-				+0.6
4,201,724	-				-0.1
4,201,782	+				-0.8
4,201,782	+				+0.1
4,201,782	+				+0.2
4,201,783	-				+0.3
4,201,783	-				-0.2
4,201,803	+				+1.5
4,201,804	-				+0.0
4,201,804	-				+0.9
4,201,939	-		PP_3691	0.12	+0.8
4,202,050	+		PP_3691	0.14	+1.1
4,202,050	+		PP_3691	0.14	+0.6
4,202,050	+		PP_3691	0.14	+0.3
4,202,050	+		PP_3691	0.14	+0.4
4,202,050	+		PP_3691	0.14	+1.6
4,202,050	+		PP_3691	0.14	+0.6
4,202,051	-		PP_3691	0.14	+2.2
4,202,051	-		PP_3691	0.14	-0.2
4,202,054	+		PP_3691	0.14	+1.1
4,202,115	+		PP_3691	0.15	+1.0
4,202,115	+		PP_3691	0.15	+1.0
4,202,116	-		PP_3691	0.15	+0.2
4,202,285	+		PP_3691	0.17	+0.2
4,202,285	+		PP_3691	0.17	+1.2
4,202,286	-		PP_3691	0.17	+0.4
4,202,286	-		PP_3691	0.17	+0.7
4,202,286	-		PP_3691	0.17	+0.4
4,202,286	-		PP_3691	0.17	+0.6
4,202,296	-		PP_3691	0.17	+0.6
4,202,391	+		PP_3691	0.19	+0.6
4,202,391	+		PP_3691	0.19	+0.6
4,202,392	-		PP_3691	0.19	+0.5
4,202,442	-		PP_3691	0.19	+0.4
4,202,479	+		PP_3691	0.20	+0.4
4,202,479	+		PP_3691	0.20	+0.2
4,202,480	-		PP_3691	0.20	+0.5
4,202,480	-		PP_3691	0.20	+0.6
4,202,514	+		PP_3691	0.21	+1.1
4,202,514	+		PP_3691	0.21	+0.4
4,202,514	+		PP_3691	0.21	-0.1
4,202,515	-		PP_3691	0.21	+0.7
4,202,515	-		PP_3691	0.21	+0.6
4,202,557	+		PP_3691	0.21	-0.2
4,202,558	-		PP_3691	0.21	+0.5
4,202,636	+		PP_3691	0.22	+1.5
4,202,637	-		PP_3691	0.22	+0.9
4,202,651	+		PP_3691	0.23	+1.6
4,202,651	+		PP_3691	0.23	+0.6
4,202,695	-		PP_3691	0.23	+1.0
4,202,695	-		PP_3691	0.23	+0.8
4,202,724	+		PP_3691	0.24	+0.3
4,202,725	-		PP_3691	0.24	-1.0
4,202,733	-		PP_3691	0.24	+0.0
4,202,786	+		PP_3691	0.25	+0.5
4,202,787	-		PP_3691	0.25	+0.8
4,202,787	-		PP_3691	0.25	+1.2
4,202,817	+		PP_3691	0.25	+0.5
4,202,817	+		PP_3691	0.25	+0.5
4,202,817	+		PP_3691	0.25	+1.2
4,202,818	-		PP_3691	0.25	+0.8
4,202,818	-		PP_3691	0.25	+1.0
4,202,830	+		PP_3691	0.25	+0.7
4,202,830	+		PP_3691	0.25	+0.0
4,202,830	+		PP_3691	0.25	+0.4
4,202,831	-		PP_3691	0.25	+1.3
4,202,831	-		PP_3691	0.25	+0.9
4,202,833	+		PP_3691	0.25	+0.6
4,202,834	-		PP_3691	0.25	+1.0
4,202,834	-		PP_3691	0.25	-0.2
4,202,834	-		PP_3691	0.25	+0.9
4,202,874	-		PP_3691	0.26	+1.0
4,203,025	-		PP_3691	0.28	+0.5
4,203,285	+		PP_3691	0.32	+0.8
4,203,285	+		PP_3691	0.32	+0.5
4,203,285	+		PP_3691	0.32	-0.4
4,203,285	+		PP_3691	0.32	+0.5
4,203,285	+		PP_3691	0.32	+1.0
4,203,303	+		PP_3691	0.32	+1.2
4,203,303	+		PP_3691	0.32	+0.9
4,203,303	+		PP_3691	0.32	+0.4
4,203,304	-		PP_3691	0.32	+0.8
4,203,304	-		PP_3691	0.32	+0.1
4,203,384	-		PP_3691	0.34	+0.0
4,203,435	+		PP_3691	0.34	+0.4
4,203,436	-		PP_3691	0.34	+0.1
4,203,444	-		PP_3691	0.35	+0.2
4,203,444	-		PP_3691	0.35	+0.3
4,203,463	+		PP_3691	0.35	+0.0
4,203,463	+		PP_3691	0.35	-0.1
4,203,500	+		PP_3691	0.35	+0.2
4,203,500	+		PP_3691	0.35	+0.7
4,203,501	-		PP_3691	0.35	+0.6
4,203,612	+		PP_3691	0.37	+1.6
4,203,612	+		PP_3691	0.37	+0.2
4,203,613	-		PP_3691	0.37	+0.6
4,203,632	+		PP_3691	0.37	+0.4
4,203,632	+		PP_3691	0.37	+1.2
4,203,632	+		PP_3691	0.37	+0.7
4,203,632	+		PP_3691	0.37	+0.8
4,203,763	-		PP_3691	0.39	-1.0
4,203,780	+		PP_3691	0.40	+0.7
4,203,780	+		PP_3691	0.40	+0.2
4,203,781	-		PP_3691	0.40	+0.8
4,203,826	+		PP_3691	0.40	+0.2
4,203,876	+		PP_3691	0.41	-0.8
4,203,876	+		PP_3691	0.41	+1.3
4,203,876	+		PP_3691	0.41	+0.8
4,203,877	-		PP_3691	0.41	+0.4
4,203,877	-		PP_3691	0.41	+0.1
4,204,005	+		PP_3691	0.43	+1.1
4,204,006	-		PP_3691	0.43	+0.4
4,204,026	-		PP_3691	0.43	+1.0
4,204,026	-		PP_3691	0.43	+0.1
4,204,026	-		PP_3691	0.43	+0.9
4,204,093	-		PP_3691	0.44	+0.9
4,204,130	+		PP_3691	0.45	+0.7
4,204,131	-		PP_3691	0.45	+0.1
4,204,145	+		PP_3691	0.45	+0.2
4,204,146	-		PP_3691	0.45	+1.4
4,204,146	-		PP_3691	0.45	+1.0
4,204,146	-		PP_3691	0.45	+1.7
4,204,146	-		PP_3691	0.45	+1.9
4,204,205	+		PP_3691	0.46	+2.0
4,204,205	+		PP_3691	0.46	+0.4
4,204,205	+		PP_3691	0.46	+0.8
4,204,206	-		PP_3691	0.46	-0.3
4,204,206	-		PP_3691	0.46	+0.6
4,204,206	-		PP_3691	0.46	-0.5
4,204,206	-		PP_3691	0.46	-0.3
4,204,206	-		PP_3691	0.46	+1.0
4,204,206	-		PP_3691	0.46	+0.5
4,204,206	-		PP_3691	0.46	+0.4
4,204,206	-		PP_3691	0.46	+1.3
4,204,422	+		PP_3691	0.49	+0.8
4,204,422	+		PP_3691	0.49	+0.1
4,204,422	+		PP_3691	0.49	+0.9
4,204,422	+		PP_3691	0.49	+1.2
4,204,423	-				+0.1
4,204,478	+		PP_3691	0.50	+0.3
4,204,633	+		PP_3691	0.53	+0.9
4,204,633	+		PP_3691	0.53	+0.4
4,204,634	-		PP_3691	0.53	+0.4
4,204,662	+		PP_3691	0.53	+0.6
4,204,663	-		PP_3691	0.53	+0.4
4,204,663	-		PP_3691	0.53	+1.5
4,204,665	+		PP_3691	0.53	+0.0
4,204,665	+		PP_3691	0.53	+0.1
4,204,666	-		PP_3691	0.53	+0.5
4,204,666	-		PP_3691	0.53	+0.8
4,204,666	-		PP_3691	0.53	+0.7
4,204,761	+		PP_3691	0.54	+0.9
4,204,761	+		PP_3691	0.54	+0.9
4,204,761	+		PP_3691	0.54	+0.6
4,204,761	+		PP_3691	0.54	+0.5
4,204,762	-		PP_3691	0.54	+0.2
4,204,762	-		PP_3691	0.54	+0.5
4,204,985	-		PP_3691	0.58	+1.2
4,204,985	-		PP_3691	0.58	+0.1
4,204,985	-		PP_3691	0.58	+1.0
4,204,992	-		PP_3691	0.58	+0.6
4,205,043	+		PP_3691	0.59	+1.7
4,205,043	+		PP_3691	0.59	+1.0
4,205,043	+		PP_3691	0.59	+2.1
4,205,044	-		PP_3691	0.59	+0.6
4,205,044	-		PP_3691	0.59	+0.0
4,205,145	+		PP_3691	0.60	+0.8
4,205,146	-		PP_3691	0.60	+0.2
4,205,153	-		PP_3691	0.60	+0.8
4,205,153	-		PP_3691	0.60	+1.3
4,205,200	-		PP_3691	0.61	+0.2
4,205,200	-		PP_3691	0.61	+1.2
4,205,299	+		PP_3691	0.63	-0.1
4,205,299	+		PP_3691	0.63	+0.8
4,205,299	+		PP_3691	0.63	+0.3
4,205,299	+		PP_3691	0.63	+0.9
4,205,300	-		PP_3691	0.63	+0.0
4,205,308	+		PP_3691	0.63	-0.1
4,205,309	-		PP_3691	0.63	-0.8
4,205,345	-		PP_3691	0.63	+0.6
4,205,462	+		PP_3691	0.65	+0.7
4,205,462	+		PP_3691	0.65	+1.0
4,205,528	-		PP_3691	0.66	+0.9
4,205,649	+		PP_3691	0.68	+0.6
4,205,649	+		PP_3691	0.68	+1.3
4,205,649	+		PP_3691	0.68	+0.6
4,205,650	-		PP_3691	0.68	+1.0
4,205,650	-		PP_3691	0.68	+0.3
4,205,737	+		PP_3691	0.69	-0.4
4,205,737	+		PP_3691	0.69	+0.3
4,205,737	+		PP_3691	0.69	+0.4
4,205,738	-		PP_3691	0.69	-1.2
4,205,738	-		PP_3691	0.69	+0.9
4,205,775	-		PP_3691	0.70	-1.0
4,205,775	-		PP_3691	0.70	+1.1
4,205,802	-		PP_3691	0.70	+0.7
4,205,802	-		PP_3691	0.70	+0.5
4,205,802	-		PP_3691	0.70	+0.7
4,205,876	-		PP_3691	0.71	+0.7
4,205,876	-		PP_3691	0.71	+0.7
4,205,942	+		PP_3691	0.72	+1.0
4,205,943	-		PP_3691	0.72	+1.2
4,205,943	-		PP_3691	0.72	+1.7
4,205,943	-		PP_3691	0.72	+0.1
4,205,943	-		PP_3691	0.72	+1.4
4,205,975	+		PP_3691	0.73	-0.3
4,206,037	+		PP_3691	0.74	+0.2
4,206,163	+		PP_3691	0.76	+0.7
4,206,163	+		PP_3691	0.76	+1.1
4,206,163	+		PP_3691	0.76	+0.3
4,206,163	+		PP_3691	0.76	+1.0
4,206,163	+		PP_3691	0.76	+0.3
4,206,163	+		PP_3691	0.76	+0.4
4,206,164	-		PP_3691	0.76	+1.1
4,206,164	-		PP_3691	0.76	+0.9
4,206,225	-		PP_3691	0.77	+0.4
4,206,227	+		PP_3691	0.77	+0.8
4,206,227	+		PP_3691	0.77	+0.4
4,206,296	+		PP_3691	0.78	+1.3
4,206,297	-		PP_3691	0.78	+1.7
4,206,297	-		PP_3691	0.78	-0.0
4,206,330	-		PP_3691	0.78	+0.3
4,206,330	-		PP_3691	0.78	+0.4
4,206,330	-		PP_3691	0.78	+0.9
4,206,465	-		PP_3691	0.80	+0.8
4,206,618	+		PP_3691	0.83	+0.2
4,206,618	+		PP_3691	0.83	+0.9
4,206,664	-		PP_3691	0.83	+1.0
4,206,832	+		PP_3691	0.86	+1.5
4,206,832	+		PP_3691	0.86	+0.7
4,206,832	+		PP_3691	0.86	+1.5
4,206,832	+		PP_3691	0.86	+0.7
4,206,832	+		PP_3691	0.86	+0.8
4,206,833	-		PP_3691	0.86	+0.6
4,206,833	-		PP_3691	0.86	+0.9
4,206,833	-		PP_3691	0.86	+0.7
4,206,833	-		PP_3691	0.86	+0.6
4,206,879	+		PP_3691	0.86	+0.9
4,206,880	-		PP_3691	0.86	+1.5
4,206,880	-		PP_3691	0.86	+0.7
4,206,933	+		PP_3691	0.87	+0.1
4,206,996	+		PP_3691	0.88	+1.3
4,206,996	+		PP_3691	0.88	+0.5
4,206,996	+		PP_3691	0.88	+1.4
4,206,997	-		PP_3691	0.88	+0.0
4,206,997	-		PP_3691	0.88	+0.6
4,206,997	-		PP_3691	0.88	+1.1
4,206,997	-		PP_3691	0.88	+1.5
4,207,076	+		PP_3691	0.89	+0.3
4,207,097	+		PP_3691	0.90	-0.3
4,207,098	-		PP_3691	0.90	-0.4
4,207,144	+				+1.2
4,207,144	+				+1.0
4,207,144	+				+2.6
4,207,145	-				-0.1
4,207,145	-				+0.4
4,207,145	-				-0.6
4,207,145	-				+1.0
4,207,145	-				+0.8
4,207,145	-				+1.1
4,207,145	-				+0.6
4,207,219	+				+0.3
4,207,335	-				+0.9
4,207,374	+				+0.2
4,207,374	+				+1.6
4,207,389	-				+0.6
4,207,481	+				+1.2
4,207,481	+				+0.2
4,207,481	+				+0.1
4,207,497	+				+0.2
4,207,561	-				+0.7
4,207,794	+				+0.2
4,207,795	-				+0.4
4,207,795	-				+0.8
4,207,860	-				-1.3
4,207,860	-				-0.7
4,207,860	-				+0.2
4,207,901	+				-0.2
4,207,959	+				+0.1
4,207,959	+				+0.7
4,207,959	+				+0.5
4,207,959	+				-0.4
4,207,995	-				-2.8
4,207,995	-				-0.5
4,208,018	+				+0.5
4,208,019	-				-1.1
4,208,069	+				+1.0
4,208,069	+				+1.3
4,208,070	-				-0.7
4,208,070	-				-0.3
4,208,070	-				+0.1
4,208,071	+				+0.9
4,208,071	+				-0.1
4,208,071	+				+1.0
4,208,071	+				+0.9
4,208,071	+				+0.8
4,208,071	+				+0.2
4,208,071	+				+0.5
4,208,071	+				+0.8
4,208,072	-				-0.8
4,208,089	+				+0.5
4,208,096	+				+0.6
4,208,128	+				-0.1
4,208,128	+				-0.0
4,208,128	+				+1.1
4,208,129	-				-0.7
4,208,194	+				+0.7
4,208,194	+				+0.3
4,208,272	+				+0.4
4,208,325	+		PP_3692	0.10	+0.8
4,208,325	+		PP_3692	0.10	-1.0
4,208,325	+		PP_3692	0.10	+0.9
4,208,326	-		PP_3692	0.10	-0.7
4,208,326	-		PP_3692	0.10	-0.6
4,208,326	-		PP_3692	0.10	-1.2
4,208,326	-		PP_3692	0.10	-0.7
4,208,328	+		PP_3692	0.10	+0.8
4,208,328	+		PP_3692	0.10	+0.2
4,208,328	+		PP_3692	0.10	+0.1
4,208,391	+		PP_3692	0.13	+0.8
4,208,392	-		PP_3692	0.13	+0.3
4,208,392	-		PP_3692	0.13	-1.1
4,208,459	+		PP_3692	0.15	+1.1
4,208,459	+		PP_3692	0.15	+0.4
4,208,460	-		PP_3692	0.15	-0.4
4,208,460	-		PP_3692	0.15	+0.1
4,208,511	+		PP_3692	0.17	+0.3
4,208,511	+		PP_3692	0.17	+0.8
4,208,511	+		PP_3692	0.17	+0.3
4,208,511	+		PP_3692	0.17	+0.2
4,208,512	-		PP_3692	0.17	-0.0
4,208,512	-		PP_3692	0.17	-0.3
4,208,512	-		PP_3692	0.17	+0.0
4,208,512	-		PP_3692	0.17	+0.0
4,208,512	-		PP_3692	0.17	-0.1
4,208,512	-		PP_3692	0.17	-0.6
4,208,538	+		PP_3692	0.18	+0.5
4,208,550	+		PP_3692	0.19	+0.5
4,208,550	+		PP_3692	0.19	+0.5
4,208,550	+		PP_3692	0.19	+1.1
4,208,551	-		PP_3692	0.19	-0.3
4,208,551	-		PP_3692	0.19	+0.0
4,208,677	+		PP_3692	0.24	-0.0
4,208,677	+		PP_3692	0.24	+0.1
4,208,678	-		PP_3692	0.24	-0.4
4,208,680	+		PP_3692	0.24	-0.5
4,208,680	+		PP_3692	0.24	+0.1
4,208,681	-		PP_3692	0.24	-0.6
4,208,696	+		PP_3692	0.24	+0.8
4,208,696	+		PP_3692	0.24	+1.4
4,208,696	+		PP_3692	0.24	+0.5
4,208,696	+		PP_3692	0.24	+0.2
4,208,696	+		PP_3692	0.24	+0.3
4,208,697	-		PP_3692	0.24	-0.6
4,208,697	-		PP_3692	0.24	+0.5
4,208,697	-		PP_3692	0.24	-0.6
4,208,697	-		PP_3692	0.24	-1.8
4,208,697	-		PP_3692	0.24	+0.1
4,208,720	+		PP_3692	0.25	+0.3
4,208,720	+		PP_3692	0.25	-0.1
4,208,721	-		PP_3692	0.25	+0.9
4,208,721	-		PP_3692	0.25	+0.2
4,208,721	-		PP_3692	0.25	+0.7