Strain Fitness in Pseudomonas putida KT2440 around PP_1769

Experiment: L-Glutamine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_1768 and PP_1769 overlap by 8 nucleotidesPP_1769 and PP_1770 are separated by 164 nucleotides PP_1768: PP_1768 - phosphoserine aminotransferase, at 1,973,991 to 1,975,076 _1768 PP_1769: PP_1769 - chorismate mutase/Prephenate dehydratase, at 1,975,069 to 1,976,172 _1769 PP_1770: PP_1770 - 3-phosphoshikimate 1-carboxyvinyltransferase, at 1,976,337 to 1,978,577 _1770 Position (kb) 1975 1976 1977Strain fitness (log2 ratio) -1 0 1at 1976.311 kb on + strandat 1976.311 kb on + strandat 1976.341 kb on + strandat 1976.341 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (C)
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1,976,311 + -1.2
1,976,311 + -0.3
1,976,341 + -1.2
1,976,341 + +0.6

Or see this region's nucleotide sequence