Experiment: trans-aconitic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu5543 and Atu5544 are separated by 40 nucleotides Atu5544 and Atu5545 are separated by 165 nucleotides Atu5545 and Atu8053 are separated by 29 nucleotides Atu8053 and Atu5546 are separated by 72 nucleotides
Atu5543: Atu5543 - AraC family transcriptional regulator, at 537,883 to 538,530
Atu5543
Atu5544: Atu5544 - hypothetical protein, at 538,571 to 538,945
Atu5544
Atu5545: Atu5545 - hypothetical protein, at 539,111 to 539,338
Atu5545
Atu8053: Atu8053 - hypothetical protein, at 539,368 to 539,553
Atu8053
Atu5546: Atu5546 - LysR family transcriptional regulator, at 539,626 to 540,579
Atu5546
Position (kb) 539
540 Strain fitness (log2 ratio) -2
-1
0
1
2 at 538.390 kb on + strand, within Atu5543 at 538.390 kb on + strand, within Atu5543 at 538.397 kb on + strand, within Atu5543 at 538.397 kb on + strand, within Atu5543 at 538.491 kb on - strand at 538.553 kb on + strand at 538.582 kb on + strand at 538.619 kb on - strand, within Atu5544 at 538.619 kb on - strand, within Atu5544 at 538.729 kb on + strand, within Atu5544 at 538.788 kb on + strand, within Atu5544 at 538.788 kb on + strand, within Atu5544 at 538.788 kb on + strand, within Atu5544 at 538.788 kb on + strand, within Atu5544 at 538.788 kb on + strand, within Atu5544 at 538.796 kb on - strand, within Atu5544 at 538.796 kb on - strand, within Atu5544 at 538.809 kb on + strand, within Atu5544 at 538.843 kb on + strand, within Atu5544 at 538.851 kb on - strand, within Atu5544 at 539.015 kb on + strand at 539.029 kb on - strand at 539.078 kb on - strand at 539.102 kb on + strand at 539.176 kb on + strand, within Atu5545 at 539.181 kb on + strand, within Atu5545 at 539.265 kb on - strand, within Atu5545 at 539.268 kb on + strand, within Atu5545 at 539.275 kb on - strand, within Atu5545 at 539.379 kb on + strand at 539.462 kb on + strand, within Atu8053 at 539.462 kb on + strand, within Atu8053 at 539.463 kb on + strand, within Atu8053 at 539.505 kb on - strand, within Atu8053 at 539.577 kb on + strand at 539.691 kb on + strand at 539.705 kb on + strand at 539.717 kb on + strand at 539.782 kb on - strand, within Atu5546 at 539.793 kb on + strand, within Atu5546 at 539.808 kb on - strand, within Atu5546 at 539.826 kb on - strand, within Atu5546 at 539.855 kb on + strand, within Atu5546 at 539.880 kb on - strand, within Atu5546 at 539.922 kb on + strand, within Atu5546 at 540.031 kb on - strand, within Atu5546 at 540.081 kb on - strand, within Atu5546 at 540.086 kb on + strand, within Atu5546 at 540.201 kb on + strand, within Atu5546 at 540.238 kb on + strand, within Atu5546 at 540.246 kb on - strand, within Atu5546 at 540.253 kb on - strand, within Atu5546 at 540.269 kb on + strand, within Atu5546 at 540.277 kb on - strand, within Atu5546 at 540.292 kb on + strand, within Atu5546 at 540.292 kb on + strand, within Atu5546 at 540.300 kb on - strand, within Atu5546 at 540.300 kb on - strand, within Atu5546 at 540.300 kb on - strand, within Atu5546 at 540.313 kb on + strand, within Atu5546 at 540.493 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction trans-aconitic (C) remove 538,390 + Atu5543 0.78 +0.9 538,390 + Atu5543 0.78 +0.0 538,397 + Atu5543 0.79 +0.4 538,397 + Atu5543 0.79 -0.1 538,491 - -0.7 538,553 + +0.4 538,582 + -0.2 538,619 - Atu5544 0.13 -0.3 538,619 - Atu5544 0.13 +0.7 538,729 + Atu5544 0.42 +0.1 538,788 + Atu5544 0.58 -0.2 538,788 + Atu5544 0.58 -0.3 538,788 + Atu5544 0.58 -0.2 538,788 + Atu5544 0.58 -0.0 538,788 + Atu5544 0.58 -0.6 538,796 - Atu5544 0.60 +0.0 538,796 - Atu5544 0.60 +0.6 538,809 + Atu5544 0.63 +0.6 538,843 + Atu5544 0.73 -0.4 538,851 - Atu5544 0.75 -0.0 539,015 + +0.1 539,029 - -0.4 539,078 - +1.5 539,102 + +0.2 539,176 + Atu5545 0.29 -0.1 539,181 + Atu5545 0.31 +0.5 539,265 - Atu5545 0.68 -0.2 539,268 + Atu5545 0.69 -0.2 539,275 - Atu5545 0.72 +0.8 539,379 + -0.2 539,462 + Atu8053 0.51 +0.4 539,462 + Atu8053 0.51 +0.3 539,463 + Atu8053 0.51 +1.1 539,505 - Atu8053 0.74 +0.1 539,577 + -0.4 539,691 + -0.2 539,705 + +0.3 539,717 + -0.4 539,782 - Atu5546 0.16 -0.3 539,793 + Atu5546 0.18 -2.0 539,808 - Atu5546 0.19 -0.4 539,826 - Atu5546 0.21 -0.1 539,855 + Atu5546 0.24 -0.7 539,880 - Atu5546 0.27 -0.4 539,922 + Atu5546 0.31 -0.4 540,031 - Atu5546 0.42 -0.1 540,081 - Atu5546 0.48 -0.3 540,086 + Atu5546 0.48 +0.4 540,201 + Atu5546 0.60 -0.0 540,238 + Atu5546 0.64 +0.1 540,246 - Atu5546 0.65 +0.4 540,253 - Atu5546 0.66 +0.1 540,269 + Atu5546 0.67 +2.5 540,277 - Atu5546 0.68 -0.0 540,292 + Atu5546 0.70 +0.1 540,292 + Atu5546 0.70 +0.1 540,300 - Atu5546 0.71 +0.4 540,300 - Atu5546 0.71 +0.2 540,300 - Atu5546 0.71 +1.6 540,313 + Atu5546 0.72 -0.1 540,493 - +0.2
Or see this region's nucleotide sequence