Experiment: trans-aconitic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0884 and Atu0885 are separated by 4 nucleotides Atu0885 and Atu0886 are separated by 104 nucleotides Atu0886 and Atu0887 are separated by 21 nucleotides Atu0887 and Atu0888 are separated by 204 nucleotides
Atu0884: Atu0884 - hypothetical protein, at 878,210 to 878,920
Atu0884
Atu0885: Atu0885 - hypothetical protein, at 878,925 to 879,239
Atu0885
Atu0886: Atu0886 - hypothetical protein, at 879,344 to 879,910
Atu0886
Atu0887: Atu0887 - acetyltransferase, at 879,932 to 880,420
Atu0887
Atu0888: Atu0888 - transcriptional regulator, MerR family, at 880,625 to 881,038
Atu0888
Position (kb) 879
880 Strain fitness (log2 ratio) -1
0
1 at 878.413 kb on - strand, within Atu0884 at 878.417 kb on + strand, within Atu0884 at 878.543 kb on - strand, within Atu0884 at 878.717 kb on + strand, within Atu0884 at 878.724 kb on - strand, within Atu0884 at 878.740 kb on + strand, within Atu0884 at 878.748 kb on - strand, within Atu0884 at 879.067 kb on + strand, within Atu0885 at 879.094 kb on + strand, within Atu0885 at 879.158 kb on - strand, within Atu0885 at 879.212 kb on + strand at 879.257 kb on - strand at 879.283 kb on - strand at 879.293 kb on + strand at 879.390 kb on + strand at 879.580 kb on - strand, within Atu0886 at 879.801 kb on + strand, within Atu0886 at 879.953 kb on + strand at 880.134 kb on + strand, within Atu0887 at 880.144 kb on + strand, within Atu0887 at 880.178 kb on - strand, within Atu0887 at 880.181 kb on - strand, within Atu0887 at 880.218 kb on + strand, within Atu0887 at 880.280 kb on - strand, within Atu0887 at 880.311 kb on + strand, within Atu0887 at 880.356 kb on - strand, within Atu0887 at 880.396 kb on + strand at 880.396 kb on + strand at 880.396 kb on + strand at 880.555 kb on - strand at 880.555 kb on - strand at 880.623 kb on + strand at 880.631 kb on - strand at 880.631 kb on - strand at 880.671 kb on + strand, within Atu0888 at 880.707 kb on + strand, within Atu0888 at 880.818 kb on - strand, within Atu0888 at 880.867 kb on - strand, within Atu0888 at 880.872 kb on - strand, within Atu0888
Per-strain Table
Position Strand Gene LocusTag Fraction trans-aconitic (C) remove 878,413 - Atu0884 0.29 -1.0 878,417 + Atu0884 0.29 -0.1 878,543 - Atu0884 0.47 +0.4 878,717 + Atu0884 0.71 -0.4 878,724 - Atu0884 0.72 +0.0 878,740 + Atu0884 0.75 +0.3 878,748 - Atu0884 0.76 -0.2 879,067 + Atu0885 0.45 +0.2 879,094 + Atu0885 0.54 -0.3 879,158 - Atu0885 0.74 +0.1 879,212 + +0.0 879,257 - +0.5 879,283 - -0.4 879,293 + +0.1 879,390 + -0.9 879,580 - Atu0886 0.42 +0.9 879,801 + Atu0886 0.81 +0.4 879,953 + +0.5 880,134 + Atu0887 0.41 -0.6 880,144 + Atu0887 0.43 -0.1 880,178 - Atu0887 0.50 +0.9 880,181 - Atu0887 0.51 -0.1 880,218 + Atu0887 0.58 +0.1 880,280 - Atu0887 0.71 +0.4 880,311 + Atu0887 0.78 -1.3 880,356 - Atu0887 0.87 +0.1 880,396 + +0.3 880,396 + +1.0 880,396 + -0.9 880,555 - +0.1 880,555 - -0.5 880,623 + +0.3 880,631 - +0.2 880,631 - -0.0 880,671 + Atu0888 0.11 +0.1 880,707 + Atu0888 0.20 -0.1 880,818 - Atu0888 0.47 -0.2 880,867 - Atu0888 0.58 -0.1 880,872 - Atu0888 0.60 -0.1
Or see this region's nucleotide sequence