Strain Fitness in Agrobacterium fabrum C58 around Atu0549

Experiment: trans-aconitic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu0547 and Atu0548 are separated by 26 nucleotidesAtu0548 and Atu0549 overlap by 4 nucleotidesAtu0549 and Atu0550 overlap by 4 nucleotides Atu0547: Atu0547 - flagellar protein, at 536,514 to 537,014 Atu0547 Atu0548: Atu0548 - flagellar L-ring protein precursor, at 537,041 to 537,760 Atu0548 Atu0549: Atu0549 - hypothetical protein, at 537,757 to 538,293 Atu0549 Atu0550: Atu0550 - flagellar P-ring protein precursor, at 538,290 to 539,411 Atu0550 Position (kb) 537 538 539Strain fitness (log2 ratio) -1 0 1 2at 536.757 kb on - strand, within Atu0547at 536.783 kb on + strand, within Atu0547at 536.786 kb on - strand, within Atu0547at 536.791 kb on - strand, within Atu0547at 536.934 kb on - strand, within Atu0547at 536.944 kb on - strand, within Atu0547at 536.944 kb on - strand, within Atu0547at 536.962 kb on + strand, within Atu0547at 536.962 kb on + strand, within Atu0547at 536.969 kb on - strandat 536.975 kb on - strandat 536.992 kb on + strandat 537.015 kb on + strandat 537.016 kb on + strandat 537.021 kb on + strandat 537.024 kb on - strandat 537.048 kb on + strandat 537.058 kb on + strandat 537.058 kb on + strandat 537.233 kb on + strand, within Atu0548at 537.304 kb on + strand, within Atu0548at 537.320 kb on + strand, within Atu0548at 537.327 kb on + strand, within Atu0548at 537.327 kb on + strand, within Atu0548at 537.327 kb on + strand, within Atu0548at 537.327 kb on + strand, within Atu0548at 537.333 kb on + strand, within Atu0548at 537.333 kb on + strand, within Atu0548at 537.335 kb on - strand, within Atu0548at 537.341 kb on - strand, within Atu0548at 537.351 kb on - strand, within Atu0548at 537.422 kb on + strand, within Atu0548at 537.494 kb on - strand, within Atu0548at 537.521 kb on - strand, within Atu0548at 537.534 kb on + strand, within Atu0548at 537.534 kb on + strand, within Atu0548at 537.542 kb on - strand, within Atu0548at 537.542 kb on - strand, within Atu0548at 537.542 kb on - strand, within Atu0548at 537.542 kb on - strand, within Atu0548at 537.542 kb on - strand, within Atu0548at 537.542 kb on - strand, within Atu0548at 537.606 kb on - strand, within Atu0548at 537.622 kb on - strand, within Atu0548at 537.831 kb on - strand, within Atu0549at 537.846 kb on + strand, within Atu0549at 538.007 kb on + strand, within Atu0549at 538.015 kb on - strand, within Atu0549at 538.046 kb on + strand, within Atu0549at 538.066 kb on + strand, within Atu0549at 538.100 kb on + strand, within Atu0549at 538.108 kb on - strand, within Atu0549at 538.108 kb on - strand, within Atu0549at 538.108 kb on - strand, within Atu0549at 538.313 kb on + strandat 538.406 kb on + strand, within Atu0550at 538.430 kb on + strand, within Atu0550at 538.506 kb on - strand, within Atu0550at 538.525 kb on + strand, within Atu0550at 538.532 kb on + strand, within Atu0550at 538.555 kb on - strand, within Atu0550at 538.562 kb on - strand, within Atu0550at 538.565 kb on + strand, within Atu0550at 538.598 kb on - strand, within Atu0550at 538.633 kb on + strand, within Atu0550at 538.685 kb on + strand, within Atu0550at 538.685 kb on + strand, within Atu0550at 538.693 kb on - strand, within Atu0550at 538.770 kb on + strand, within Atu0550at 538.771 kb on - strand, within Atu0550at 538.917 kb on - strand, within Atu0550at 538.946 kb on - strand, within Atu0550at 538.984 kb on + strand, within Atu0550at 538.984 kb on + strand, within Atu0550at 538.992 kb on - strand, within Atu0550at 538.992 kb on - strand, within Atu0550at 539.017 kb on + strand, within Atu0550at 539.025 kb on - strand, within Atu0550at 539.075 kb on + strand, within Atu0550at 539.076 kb on - strand, within Atu0550at 539.087 kb on + strand, within Atu0550at 539.095 kb on - strand, within Atu0550at 539.146 kb on + strand, within Atu0550at 539.146 kb on + strand, within Atu0550at 539.154 kb on - strand, within Atu0550at 539.154 kb on - strand, within Atu0550at 539.197 kb on + strand, within Atu0550at 539.205 kb on - strand, within Atu0550at 539.207 kb on - strand, within Atu0550at 539.255 kb on - strand, within Atu0550at 539.262 kb on - strand, within Atu0550

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Per-strain Table

Position Strand Gene LocusTag Fraction trans-aconitic (C)
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536,757 - Atu0547 0.49 +0.6
536,783 + Atu0547 0.54 +0.1
536,786 - Atu0547 0.54 +0.4
536,791 - Atu0547 0.55 -0.4
536,934 - Atu0547 0.84 -0.5
536,944 - Atu0547 0.86 -1.2
536,944 - Atu0547 0.86 +0.2
536,962 + Atu0547 0.89 +0.2
536,962 + Atu0547 0.89 +0.1
536,969 - -0.6
536,975 - -0.6
536,992 + +0.4
537,015 + +0.8
537,016 + -0.2
537,021 + +0.0
537,024 - -0.1
537,048 + +0.0
537,058 + +0.4
537,058 + +0.2
537,233 + Atu0548 0.27 -1.4
537,304 + Atu0548 0.37 -0.1
537,320 + Atu0548 0.39 +0.3
537,327 + Atu0548 0.40 -1.0
537,327 + Atu0548 0.40 +0.3
537,327 + Atu0548 0.40 -0.1
537,327 + Atu0548 0.40 +0.7
537,333 + Atu0548 0.41 -0.0
537,333 + Atu0548 0.41 +0.2
537,335 - Atu0548 0.41 -0.2
537,341 - Atu0548 0.42 -1.6
537,351 - Atu0548 0.43 +0.0
537,422 + Atu0548 0.53 +0.1
537,494 - Atu0548 0.63 -0.0
537,521 - Atu0548 0.67 -0.3
537,534 + Atu0548 0.68 +0.4
537,534 + Atu0548 0.68 +0.5
537,542 - Atu0548 0.70 +0.1
537,542 - Atu0548 0.70 +0.7
537,542 - Atu0548 0.70 +0.1
537,542 - Atu0548 0.70 +0.1
537,542 - Atu0548 0.70 -0.2
537,542 - Atu0548 0.70 -0.3
537,606 - Atu0548 0.78 -0.2
537,622 - Atu0548 0.81 +0.3
537,831 - Atu0549 0.14 +0.4
537,846 + Atu0549 0.17 +0.2
538,007 + Atu0549 0.47 +0.1
538,015 - Atu0549 0.48 +0.8
538,046 + Atu0549 0.54 +0.0
538,066 + Atu0549 0.58 +0.0
538,100 + Atu0549 0.64 +0.2
538,108 - Atu0549 0.65 +0.6
538,108 - Atu0549 0.65 +2.3
538,108 - Atu0549 0.65 +0.3
538,313 + -0.1
538,406 + Atu0550 0.10 +0.2
538,430 + Atu0550 0.12 -0.4
538,506 - Atu0550 0.19 +0.9
538,525 + Atu0550 0.21 +0.9
538,532 + Atu0550 0.22 -0.1
538,555 - Atu0550 0.24 +0.2
538,562 - Atu0550 0.24 -0.1
538,565 + Atu0550 0.25 +0.1
538,598 - Atu0550 0.27 +1.3
538,633 + Atu0550 0.31 +0.4
538,685 + Atu0550 0.35 -0.0
538,685 + Atu0550 0.35 +0.0
538,693 - Atu0550 0.36 +0.1
538,770 + Atu0550 0.43 -0.1
538,771 - Atu0550 0.43 +0.4
538,917 - Atu0550 0.56 -0.3
538,946 - Atu0550 0.58 +0.8
538,984 + Atu0550 0.62 +0.5
538,984 + Atu0550 0.62 -0.0
538,992 - Atu0550 0.63 +0.5
538,992 - Atu0550 0.63 -0.9
539,017 + Atu0550 0.65 -0.2
539,025 - Atu0550 0.66 -0.3
539,075 + Atu0550 0.70 -0.4
539,076 - Atu0550 0.70 +0.6
539,087 + Atu0550 0.71 +1.1
539,095 - Atu0550 0.72 +0.1
539,146 + Atu0550 0.76 -0.1
539,146 + Atu0550 0.76 -0.6
539,154 - Atu0550 0.77 +0.3
539,154 - Atu0550 0.77 +0.1
539,197 + Atu0550 0.81 +0.9
539,205 - Atu0550 0.82 -0.2
539,207 - Atu0550 0.82 -0.4
539,255 - Atu0550 0.86 -0.1
539,262 - Atu0550 0.87 -0.4

Or see this region's nucleotide sequence