Strain Fitness in Pseudomonas putida KT2440 around PP_5181

Experiment: L-Glutamic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_5180 and PP_5181 are separated by 156 nucleotidesPP_5181 and PP_5182 are separated by 168 nucleotides PP_5180: PP_5180 - spermidine/putrescine ABC transporter - periplasmic subunit, at 5,906,872 to 5,907,966 _5180 PP_5181: PP_5181 - spermidine/putrescine ABC transporter - periplasmic subunit, at 5,908,123 to 5,909,220 _5181 PP_5182: PP_5182 - polyamine:pyruvate transaminase, at 5,909,389 to 5,910,750 _5182 Position (kb) 5908 5909 5910Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 5907.241 kb on + strand, within PP_5180at 5907.241 kb on + strand, within PP_5180at 5907.241 kb on + strand, within PP_5180at 5907.242 kb on - strand, within PP_5180at 5907.242 kb on - strand, within PP_5180at 5907.299 kb on + strand, within PP_5180at 5907.300 kb on - strand, within PP_5180at 5907.300 kb on - strand, within PP_5180at 5907.300 kb on - strand, within PP_5180at 5907.317 kb on + strand, within PP_5180at 5907.317 kb on + strand, within PP_5180at 5907.317 kb on + strand, within PP_5180at 5907.317 kb on + strand, within PP_5180at 5907.326 kb on + strand, within PP_5180at 5907.326 kb on + strand, within PP_5180at 5907.326 kb on + strand, within PP_5180at 5907.326 kb on + strand, within PP_5180at 5907.327 kb on - strand, within PP_5180at 5907.365 kb on + strand, within PP_5180at 5907.365 kb on + strand, within PP_5180at 5907.366 kb on - strand, within PP_5180at 5907.404 kb on + strand, within PP_5180at 5907.404 kb on + strand, within PP_5180at 5907.404 kb on + strand, within PP_5180at 5907.405 kb on - strand, within PP_5180at 5907.405 kb on - strand, within PP_5180at 5907.405 kb on - strand, within PP_5180at 5907.405 kb on - strand, within PP_5180at 5907.405 kb on - strand, within PP_5180at 5907.554 kb on + strand, within PP_5180at 5907.554 kb on + strand, within PP_5180at 5907.555 kb on - strand, within PP_5180at 5907.582 kb on - strand, within PP_5180at 5907.582 kb on - strand, within PP_5180at 5907.654 kb on - strand, within PP_5180at 5907.860 kb on + strandat 5907.861 kb on - strandat 5907.874 kb on - strandat 5907.874 kb on - strandat 5907.875 kb on + strandat 5907.875 kb on + strandat 5907.876 kb on - strandat 5907.876 kb on - strandat 5907.876 kb on - strandat 5907.876 kb on - strandat 5907.876 kb on - strandat 5907.953 kb on - strandat 5907.961 kb on - strandat 5908.037 kb on - strandat 5908.037 kb on - strandat 5908.069 kb on + strandat 5908.070 kb on - strandat 5908.125 kb on - strandat 5908.199 kb on + strandat 5908.200 kb on - strandat 5908.200 kb on - strandat 5908.200 kb on - strandat 5908.229 kb on + strandat 5908.229 kb on + strandat 5908.358 kb on + strand, within PP_5181at 5908.358 kb on + strand, within PP_5181at 5908.371 kb on + strand, within PP_5181at 5908.372 kb on - strand, within PP_5181at 5908.407 kb on - strand, within PP_5181at 5908.407 kb on - strand, within PP_5181at 5908.407 kb on - strand, within PP_5181at 5908.413 kb on + strand, within PP_5181at 5908.439 kb on + strand, within PP_5181at 5908.439 kb on + strand, within PP_5181at 5908.439 kb on + strand, within PP_5181at 5908.440 kb on - strand, within PP_5181at 5908.440 kb on - strand, within PP_5181at 5908.440 kb on - strand, within PP_5181at 5908.517 kb on - strand, within PP_5181at 5908.550 kb on + strand, within PP_5181at 5908.551 kb on - strand, within PP_5181at 5908.568 kb on + strand, within PP_5181at 5908.569 kb on - strand, within PP_5181at 5908.569 kb on - strand, within PP_5181at 5908.655 kb on + strand, within PP_5181at 5908.656 kb on - strand, within PP_5181at 5908.805 kb on + strand, within PP_5181at 5908.805 kb on + strand, within PP_5181at 5908.830 kb on + strand, within PP_5181at 5908.830 kb on + strand, within PP_5181at 5908.830 kb on + strand, within PP_5181at 5908.830 kb on + strand, within PP_5181at 5908.830 kb on + strand, within PP_5181at 5908.831 kb on - strand, within PP_5181at 5908.831 kb on - strand, within PP_5181at 5908.831 kb on - strand, within PP_5181at 5908.831 kb on - strand, within PP_5181at 5908.831 kb on - strand, within PP_5181at 5908.832 kb on + strand, within PP_5181at 5908.832 kb on + strand, within PP_5181at 5908.832 kb on + strand, within PP_5181at 5908.832 kb on + strand, within PP_5181at 5908.832 kb on + strand, within PP_5181at 5908.832 kb on + strand, within PP_5181at 5908.832 kb on + strand, within PP_5181at 5908.832 kb on + strand, within PP_5181at 5908.832 kb on + strand, within PP_5181at 5908.832 kb on + strand, within PP_5181at 5908.833 kb on - strand, within PP_5181at 5908.833 kb on - strand, within PP_5181at 5908.833 kb on - strand, within PP_5181at 5908.833 kb on - strand, within PP_5181at 5908.833 kb on - strand, within PP_5181at 5908.833 kb on - strand, within PP_5181at 5908.940 kb on + strand, within PP_5181at 5908.941 kb on - strand, within PP_5181at 5909.057 kb on + strand, within PP_5181at 5909.057 kb on + strand, within PP_5181at 5909.057 kb on + strand, within PP_5181at 5909.058 kb on - strand, within PP_5181at 5909.058 kb on - strand, within PP_5181at 5909.114 kb on + strandat 5909.115 kb on - strandat 5909.115 kb on - strandat 5909.127 kb on + strandat 5909.127 kb on + strandat 5909.127 kb on + strandat 5909.127 kb on + strandat 5909.127 kb on + strandat 5909.128 kb on - strandat 5909.128 kb on - strandat 5909.128 kb on - strandat 5909.128 kb on - strandat 5909.129 kb on + strandat 5909.130 kb on - strandat 5909.130 kb on - strandat 5909.130 kb on - strandat 5909.215 kb on - strandat 5909.224 kb on + strandat 5909.224 kb on + strandat 5909.224 kb on + strandat 5909.224 kb on + strandat 5909.245 kb on + strandat 5909.246 kb on - strandat 5909.246 kb on - strandat 5909.305 kb on + strandat 5909.330 kb on + strandat 5909.352 kb on + strandat 5909.353 kb on - strandat 5909.353 kb on - strandat 5909.353 kb on - strandat 5909.353 kb on - strandat 5909.353 kb on - strandat 5909.360 kb on + strandat 5909.361 kb on - strandat 5909.361 kb on - strandat 5909.379 kb on + strandat 5909.467 kb on + strandat 5909.867 kb on + strand, within PP_5182at 5909.867 kb on + strand, within PP_5182at 5909.867 kb on + strand, within PP_5182at 5909.868 kb on - strand, within PP_5182at 5909.918 kb on + strand, within PP_5182at 5909.919 kb on - strand, within PP_5182at 5909.919 kb on - strand, within PP_5182at 5909.921 kb on + strand, within PP_5182at 5909.921 kb on + strand, within PP_5182at 5909.994 kb on - strand, within PP_5182at 5909.994 kb on - strand, within PP_5182at 5910.189 kb on - strand, within PP_5182

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamic (C)
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5,907,241 + PP_5180 0.34 -0.3
5,907,241 + PP_5180 0.34 -0.3
5,907,241 + PP_5180 0.34 -1.7
5,907,242 - PP_5180 0.34 +0.8
5,907,242 - PP_5180 0.34 -0.1
5,907,299 + PP_5180 0.39 -1.3
5,907,300 - PP_5180 0.39 +0.1
5,907,300 - PP_5180 0.39 -0.0
5,907,300 - PP_5180 0.39 +0.6
5,907,317 + PP_5180 0.41 +1.3
5,907,317 + PP_5180 0.41 +0.5
5,907,317 + PP_5180 0.41 +1.2
5,907,317 + PP_5180 0.41 +0.9
5,907,326 + PP_5180 0.41 +1.1
5,907,326 + PP_5180 0.41 +0.4
5,907,326 + PP_5180 0.41 +1.2
5,907,326 + PP_5180 0.41 +0.6
5,907,327 - PP_5180 0.42 -0.3
5,907,365 + PP_5180 0.45 -0.2
5,907,365 + PP_5180 0.45 +0.6
5,907,366 - PP_5180 0.45 -0.8
5,907,404 + PP_5180 0.49 +0.9
5,907,404 + PP_5180 0.49 -0.4
5,907,404 + PP_5180 0.49 -0.5
5,907,405 - PP_5180 0.49 -0.2
5,907,405 - PP_5180 0.49 -0.3
5,907,405 - PP_5180 0.49 +0.9
5,907,405 - PP_5180 0.49 -1.3
5,907,405 - PP_5180 0.49 +0.3
5,907,554 + PP_5180 0.62 +1.1
5,907,554 + PP_5180 0.62 +0.5
5,907,555 - PP_5180 0.62 +1.9
5,907,582 - PP_5180 0.65 +2.0
5,907,582 - PP_5180 0.65 -0.2
5,907,654 - PP_5180 0.71 -0.6
5,907,860 + +0.3
5,907,861 - -0.2
5,907,874 - -0.4
5,907,874 - -0.4
5,907,875 + +0.6
5,907,875 + -0.7
5,907,876 - -0.1
5,907,876 - -0.1
5,907,876 - +0.1
5,907,876 - +0.2
5,907,876 - -0.8
5,907,953 - +0.3
5,907,961 - -0.6
5,908,037 - -2.8
5,908,037 - +0.3
5,908,069 + +1.7
5,908,070 - -0.3
5,908,125 - +0.1
5,908,199 + -1.1
5,908,200 - +0.6
5,908,200 - +0.5
5,908,200 - -0.1
5,908,229 + +0.8
5,908,229 + +0.8
5,908,358 + PP_5181 0.21 +0.2
5,908,358 + PP_5181 0.21 +0.5
5,908,371 + PP_5181 0.23 +0.8
5,908,372 - PP_5181 0.23 +0.4
5,908,407 - PP_5181 0.26 +0.4
5,908,407 - PP_5181 0.26 +0.2
5,908,407 - PP_5181 0.26 +0.2
5,908,413 + PP_5181 0.26 -0.6
5,908,439 + PP_5181 0.29 -0.0
5,908,439 + PP_5181 0.29 +0.6
5,908,439 + PP_5181 0.29 -0.2
5,908,440 - PP_5181 0.29 +0.5
5,908,440 - PP_5181 0.29 +2.5
5,908,440 - PP_5181 0.29 +1.8
5,908,517 - PP_5181 0.36 +1.1
5,908,550 + PP_5181 0.39 +0.6
5,908,551 - PP_5181 0.39 +0.0
5,908,568 + PP_5181 0.41 +1.2
5,908,569 - PP_5181 0.41 +1.0
5,908,569 - PP_5181 0.41 +0.2
5,908,655 + PP_5181 0.48 +0.3
5,908,656 - PP_5181 0.49 +1.1
5,908,805 + PP_5181 0.62 +0.9
5,908,805 + PP_5181 0.62 -0.1
5,908,830 + PP_5181 0.64 -1.8
5,908,830 + PP_5181 0.64 -0.3
5,908,830 + PP_5181 0.64 +0.3
5,908,830 + PP_5181 0.64 +0.7
5,908,830 + PP_5181 0.64 +0.9
5,908,831 - PP_5181 0.64 -0.4
5,908,831 - PP_5181 0.64 +0.5
5,908,831 - PP_5181 0.64 +0.4
5,908,831 - PP_5181 0.64 +0.5
5,908,831 - PP_5181 0.64 +1.0
5,908,832 + PP_5181 0.65 +1.1
5,908,832 + PP_5181 0.65 -0.9
5,908,832 + PP_5181 0.65 -0.2
5,908,832 + PP_5181 0.65 +0.6
5,908,832 + PP_5181 0.65 +0.4
5,908,832 + PP_5181 0.65 -0.0
5,908,832 + PP_5181 0.65 +0.9
5,908,832 + PP_5181 0.65 +0.6
5,908,832 + PP_5181 0.65 +0.9
5,908,832 + PP_5181 0.65 -0.6
5,908,833 - PP_5181 0.65 +1.0
5,908,833 - PP_5181 0.65 -0.1
5,908,833 - PP_5181 0.65 -0.7
5,908,833 - PP_5181 0.65 +0.0
5,908,833 - PP_5181 0.65 +0.4
5,908,833 - PP_5181 0.65 +0.2
5,908,940 + PP_5181 0.74 +1.2
5,908,941 - PP_5181 0.74 -0.0
5,909,057 + PP_5181 0.85 +0.5
5,909,057 + PP_5181 0.85 +0.7
5,909,057 + PP_5181 0.85 +0.8
5,909,058 - PP_5181 0.85 +1.2
5,909,058 - PP_5181 0.85 +1.4
5,909,114 + +0.2
5,909,115 - -0.2
5,909,115 - +0.7
5,909,127 + +0.4
5,909,127 + +0.5
5,909,127 + +2.0
5,909,127 + -2.4
5,909,127 + -1.0
5,909,128 - +1.4
5,909,128 - +0.2
5,909,128 - -0.8
5,909,128 - +0.7
5,909,129 + +0.5
5,909,130 - -1.7
5,909,130 - +0.6
5,909,130 - +0.6
5,909,215 - +0.1
5,909,224 + -0.0
5,909,224 + -0.6
5,909,224 + +1.2
5,909,224 + +0.5
5,909,245 + +0.6
5,909,246 - +0.7
5,909,246 - +0.2
5,909,305 + +0.9
5,909,330 + -0.8
5,909,352 + -0.6
5,909,353 - +1.1
5,909,353 - -1.3
5,909,353 - +0.3
5,909,353 - -2.5
5,909,353 - -0.9
5,909,360 + +0.4
5,909,361 - -1.3
5,909,361 - +0.5
5,909,379 + -1.1
5,909,467 + +0.3
5,909,867 + PP_5182 0.35 -1.1
5,909,867 + PP_5182 0.35 +0.3
5,909,867 + PP_5182 0.35 +1.0
5,909,868 - PP_5182 0.35 +1.1
5,909,918 + PP_5182 0.39 +0.4
5,909,919 - PP_5182 0.39 -0.2
5,909,919 - PP_5182 0.39 +0.7
5,909,921 + PP_5182 0.39 -0.1
5,909,921 + PP_5182 0.39 -1.0
5,909,994 - PP_5182 0.44 +0.2
5,909,994 - PP_5182 0.44 +0.2
5,910,189 - PP_5182 0.59 +2.7

Or see this region's nucleotide sequence