Strain Fitness in Pseudomonas putida KT2440 around PP_1776

Experiment: L-Glutamic (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Glutamic (C)
1,983,057	+		PP_1775	0.70	-0.9
1,983,057	+		PP_1775	0.70	-0.1
1,983,132	+		PP_1775	0.76	-0.1
1,983,133	-		PP_1775	0.76	-0.5
1,983,212	-		PP_1775	0.81	+1.0
1,983,271	-		PP_1775	0.85	-1.3
1,983,271	-		PP_1775	0.85	+0.9
1,983,450	-				-1.5
1,983,470	+				-0.8
1,983,470	+				+0.9
1,983,470	+				+0.2
1,983,471	-				-0.1
1,983,471	-				+0.6
1,983,471	-				-2.0
1,983,471	-				-0.6
1,983,471	-				+0.7
1,983,481	-				-1.3
1,983,564	+				-0.3
1,983,565	-				-1.3
1,983,625	+				+0.6
1,983,625	+				+0.0
1,983,625	+				+0.0
1,983,625	+				-0.7
1,983,625	+				+0.2
1,983,626	-				-0.4
1,983,626	-				-0.5
1,983,626	-				+0.2
1,983,644	+				-0.2
1,983,644	+				-0.7
1,983,650	-				-0.6
1,983,710	-				+0.2
1,983,710	-				-0.3
1,983,713	+				-0.2
1,983,714	-				+0.7
1,983,748	+				+1.1
1,983,749	-				+2.0
1,983,751	+				+1.5
1,983,751	+				+0.7
1,983,751	+				-0.7
1,983,752	-				+1.0
1,983,752	-				+0.2
1,983,756	+				-0.3
1,983,756	+				+0.7
1,983,756	+				+0.8
1,983,756	+				+0.4
1,983,757	-				-0.3
1,983,757	-				+2.1
1,983,757	-				+0.2
1,983,865	+				+0.5
1,983,866	-				+0.3
1,984,053	+		PP_1776	0.17	+0.4
1,984,053	+		PP_1776	0.17	-0.0
1,984,053	+		PP_1776	0.17	+0.8
1,984,253	+		PP_1776	0.31	+0.4
1,984,254	-		PP_1776	0.31	+0.8
1,984,254	-		PP_1776	0.31	+1.2
1,984,264	-		PP_1776	0.31	-0.3
1,984,284	+		PP_1776	0.33	+0.3
1,984,284	+		PP_1776	0.33	-0.3
1,984,285	-		PP_1776	0.33	+1.2
1,984,324	+		PP_1776	0.36	+0.9
1,984,325	-		PP_1776	0.36	+0.4
1,984,325	-		PP_1776	0.36	+1.2
1,984,374	+		PP_1776	0.39	+0.5
1,984,375	-		PP_1776	0.39	+1.3
1,984,375	-		PP_1776	0.39	+1.0
1,984,375	-		PP_1776	0.39	-0.2
1,984,375	-		PP_1776	0.39	+0.0
1,984,375	-		PP_1776	0.39	-0.3
1,984,392	+		PP_1776	0.40	+1.4
1,984,393	-		PP_1776	0.40	+0.6
1,984,455	+		PP_1776	0.45	+0.7
1,984,455	+		PP_1776	0.45	+0.6
1,984,455	+		PP_1776	0.45	+1.6
1,984,456	-				+0.1
1,984,456	-		PP_1776	0.45	+0.4
1,984,526	+		PP_1776	0.50	-0.3
1,984,526	+		PP_1776	0.50	+0.1
1,984,526	+		PP_1776	0.50	-0.3
1,984,526	+		PP_1776	0.50	+1.4
1,984,526	+		PP_1776	0.50	+0.9
1,984,526	+		PP_1776	0.50	+0.3
1,984,526	+		PP_1776	0.50	+0.7
1,984,527	-		PP_1776	0.50	+1.4
1,984,527	-		PP_1776	0.50	+0.7
1,984,725	+		PP_1776	0.63	-0.3
1,984,726	-		PP_1776	0.63	+0.9
1,984,743	+		PP_1776	0.65	-0.1
1,984,743	+		PP_1776	0.65	+0.5
1,984,743	+		PP_1776	0.65	+0.8
1,984,743	+		PP_1776	0.65	-0.3
1,984,743	+		PP_1776	0.65	+0.5
1,984,743	+		PP_1776	0.65	+0.3
1,984,744	-		PP_1776	0.65	+0.5
1,984,744	-		PP_1776	0.65	+0.5
1,984,744	-		PP_1776	0.65	+0.5
1,984,777	+		PP_1776	0.67	+0.7
1,984,777	+		PP_1776	0.67	+2.2
1,984,778	-		PP_1776	0.67	+1.3
1,984,778	-		PP_1776	0.67	+0.5
1,984,778	-		PP_1776	0.67	+0.3
1,984,801	+		PP_1776	0.69	+1.0
1,984,801	+		PP_1776	0.69	+1.1
1,984,802	-		PP_1776	0.69	+1.1
1,984,802	-		PP_1776	0.69	+0.2
1,984,832	+		PP_1776	0.71	+1.2
1,984,832	+		PP_1776	0.71	+0.3
1,984,833	-		PP_1776	0.71	+0.1
1,984,833	-		PP_1776	0.71	+0.7
1,984,859	+		PP_1776	0.73	+0.7
1,984,859	+		PP_1776	0.73	-1.1
1,984,900	+		PP_1776	0.76	-0.9
1,984,900	+		PP_1776	0.76	+0.5
1,984,900	+		PP_1776	0.76	+0.4
1,984,900	+		PP_1776	0.76	+0.4
1,984,935	+		PP_1776	0.78	+2.6
1,984,935	+		PP_1776	0.78	-0.5
1,984,935	+		PP_1776	0.78	+1.2
1,984,935	+		PP_1776	0.78	+0.2
1,984,935	+		PP_1776	0.78	-0.7
1,984,936	-		PP_1776	0.78	+0.1
1,984,936	-		PP_1776	0.78	+0.5
1,984,936	-		PP_1776	0.78	-0.2
1,984,936	-		PP_1776	0.78	-0.7
1,984,936	-		PP_1776	0.78	+0.4
1,984,936	-		PP_1776	0.78	+0.7
1,984,936	-		PP_1776	0.78	+1.0
1,985,165	-				-0.2
1,985,165	-				-0.7
1,985,165	-				+0.0
1,985,193	+				-0.1
1,985,194	-				-1.2
1,985,232	+				+0.7
1,985,233	-				+0.1
1,985,233	-				+0.2
1,985,233	-				-1.8
1,985,233	-				-0.7
1,985,368	+				-0.4
1,985,369	-				+0.1
1,985,369	-				-0.5
1,985,369	-				+1.4
1,985,369	-				+0.1
1,985,381	+				-0.8
1,985,381	+				-0.7
1,985,381	+				+0.9
1,985,381	+				-0.3
1,985,381	+				+1.6
1,985,381	+				+0.3
1,985,381	+				+1.3
1,985,381	+				+0.6
1,985,381	+				-0.7
1,985,381	+				-0.3
1,985,381	+				+0.7
1,985,381	+				-0.9
1,985,381	+				-0.1
1,985,381	+				-0.3
1,985,381	+				+0.9
1,985,381	+				+0.5
1,985,381	+				+0.5
1,985,381	+				+0.0
1,985,381	+				-1.8
1,985,381	+				+1.7
1,985,381	+				-1.0
1,985,381	+				+0.3
1,985,381	+				+0.2
1,985,381	+				+1.0
1,985,381	+				-1.1
1,985,382	-				+0.3
1,985,382	-				+0.8
1,985,382	-				-0.9
1,985,382	-				+0.9
1,985,382	-				-0.4
1,985,382	-				-1.8
1,985,382	-				-0.0
1,985,382	-				+0.2
1,985,382	-				-1.6
1,985,382	-				-0.2
1,985,382	-				+0.8
1,985,382	-				+0.3
1,985,382	-				-0.6
1,985,382	-				-0.2
1,985,382	-				+1.4
1,985,385	+				+0.8
1,985,385	+				-0.5
1,985,385	+				-0.4
1,985,386	-				+0.2
1,985,418	+				+0.5
1,985,418	+				+0.9
1,985,418	+				-0.7
1,985,419	-				-0.0
1,985,466	+				+0.2
1,985,467	-				+0.8
1,985,472	-				+0.6
1,985,472	-				-0.5
1,985,511	+				+0.5
1,985,511	+				+0.5
1,985,512	-				-0.5
1,985,512	-				+0.6
1,985,518	+				+0.1
1,985,518	+				-0.9
1,985,519	-		PP_1777	0.10	-1.5
1,985,519	-		PP_1777	0.10	-1.3
1,985,519	-		PP_1777	0.10	-1.8
1,985,597	+		PP_1777	0.16	+0.6
1,985,597	+		PP_1777	0.16	-0.4
1,985,599	+		PP_1777	0.16	-0.5
1,985,599	+		PP_1777	0.16	-0.1
1,985,599	+		PP_1777	0.16	-0.0
1,985,599	+		PP_1777	0.16	-0.2
1,985,600	-		PP_1777	0.16	+0.7
1,985,600	-		PP_1777	0.16	+0.6
1,985,600	-		PP_1777	0.16	+1.0
1,985,600	-		PP_1777	0.16	+0.0
1,985,600	-		PP_1777	0.16	+0.6
1,985,600	-		PP_1777	0.16	-1.9
1,985,603	+		PP_1777	0.16	-1.2
1,985,603	+		PP_1777	0.16	+1.2
1,985,604	-		PP_1777	0.16	-0.9
1,985,604	-		PP_1777	0.16	-2.3
1,985,604	-		PP_1777	0.16	-0.9
1,985,604	-		PP_1777	0.16	+0.6
1,985,604	-		PP_1777	0.16	+0.4
1,985,604	-		PP_1777	0.16	+0.1
1,985,631	+		PP_1777	0.18	+0.6
1,985,631	+		PP_1777	0.18	-0.6
1,985,631	+		PP_1777	0.18	+2.1
1,985,688	-		PP_1777	0.22	+0.6
1,985,700	+		PP_1777	0.23	-2.7
1,985,700	+		PP_1777	0.23	-0.0
1,985,700	+		PP_1777	0.23	+0.7
1,985,700	+		PP_1777	0.23	+1.4
1,985,701	-		PP_1777	0.23	+1.4
1,985,702	+		PP_1777	0.23	+0.7
1,985,738	+		PP_1777	0.26	-0.7
1,985,739	-		PP_1777	0.26	+0.6
1,985,739	-		PP_1777	0.26	-0.6
1,985,739	-		PP_1777	0.26	+0.4
1,985,851	-		PP_1777	0.34	+0.1
1,985,871	+		PP_1777	0.36	+0.1
1,985,871	+		PP_1777	0.36	+0.7
1,985,871	+		PP_1777	0.36	+1.2
1,985,871	+		PP_1777	0.36	+0.2
1,985,872	-		PP_1777	0.36	-2.7
1,985,872	-		PP_1777	0.36	+1.4
1,985,886	-		PP_1777	0.37	+0.4
1,985,922	-		PP_1777	0.40	+0.0
1,985,985	-		PP_1777	0.44	-1.4
1,986,037	+		PP_1777	0.48	-0.1
1,986,056	+		PP_1777	0.49	+0.0
1,986,056	+		PP_1777	0.49	-0.5
1,986,056	+		PP_1777	0.49	+1.0
1,986,057	-		PP_1777	0.50	+0.6
1,986,057	-		PP_1777	0.50	+1.1
1,986,057	-		PP_1777	0.50	+1.1
1,986,096	-		PP_1777	0.52	+0.1
1,986,162	+		PP_1777	0.57	+0.5
1,986,162	+		PP_1777	0.57	-0.0
1,986,163	-		PP_1777	0.57	+0.3
1,986,165	+		PP_1777	0.57	+0.5
1,986,165	+		PP_1777	0.57	-0.5
1,986,165	+		PP_1777	0.57	-2.5
1,986,165	+		PP_1777	0.57	+0.8
1,986,166	-		PP_1777	0.58	-0.2
1,986,166	-		PP_1777	0.58	-0.5
1,986,166	-		PP_1777	0.58	+0.5
1,986,166	-		PP_1777	0.58	-1.9
1,986,166	-		PP_1777	0.58	-0.2
1,986,166	-		PP_1777	0.58	+1.2
1,986,166	-		PP_1777	0.58	+0.7
1,986,166	-		PP_1777	0.58	+0.1
1,986,166	-		PP_1777	0.58	+0.3
1,986,166	-		PP_1777	0.58	-0.0
1,986,169	+		PP_1777	0.58	-2.0
1,986,169	+		PP_1777	0.58	+0.4
1,986,169	+		PP_1777	0.58	+0.8
1,986,170	-		PP_1777	0.58	+0.8
1,986,170	-		PP_1777	0.58	+0.4
1,986,170	-		PP_1777	0.58	+3.4
1,986,170	-		PP_1777	0.58	+5.2
1,986,170	-		PP_1777	0.58	+0.7
1,986,170	-		PP_1777	0.58	+0.1