Experiment: D-glutamine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0415 and Atu8121 are separated by 203 nucleotides Atu8121 and Atu0418 are separated by 49 nucleotides
Atu0415: Atu0415 - hypothetical protein, at 411,286 to 412,248
Atu0415
Atu8121: Atu8121 - hypothetical protein, at 412,452 to 413,651
Atu8121
Atu0418: Atu0418 - hypothetical protein, at 413,701 to 414,582
Atu0418
Position (kb) 412
413
414 Strain fitness (log2 ratio) -1
0
1
2
3 at 411.560 kb on + strand, within Atu0415 at 411.588 kb on + strand, within Atu0415 at 411.588 kb on + strand, within Atu0415 at 411.588 kb on + strand, within Atu0415 at 411.588 kb on + strand, within Atu0415 at 411.596 kb on - strand, within Atu0415 at 411.597 kb on + strand, within Atu0415 at 411.633 kb on - strand, within Atu0415 at 411.640 kb on + strand, within Atu0415 at 411.659 kb on + strand, within Atu0415 at 411.659 kb on + strand, within Atu0415 at 411.659 kb on + strand, within Atu0415 at 411.659 kb on - strand, within Atu0415 at 411.667 kb on - strand, within Atu0415 at 411.667 kb on - strand, within Atu0415 at 411.707 kb on + strand, within Atu0415 at 411.730 kb on - strand, within Atu0415 at 411.760 kb on + strand, within Atu0415 at 411.822 kb on - strand, within Atu0415 at 411.860 kb on + strand, within Atu0415 at 412.040 kb on + strand, within Atu0415 at 412.048 kb on - strand, within Atu0415 at 412.051 kb on + strand, within Atu0415 at 412.051 kb on + strand, within Atu0415 at 412.156 kb on - strand at 412.306 kb on + strand at 412.328 kb on + strand at 412.336 kb on - strand at 412.433 kb on - strand at 412.450 kb on + strand at 412.495 kb on + strand at 412.500 kb on + strand at 412.625 kb on + strand, within Atu8121 at 412.625 kb on + strand, within Atu8121 at 412.711 kb on - strand, within Atu8121 at 412.713 kb on + strand, within Atu8121 at 412.713 kb on + strand, within Atu8121 at 412.721 kb on - strand, within Atu8121 at 412.723 kb on + strand, within Atu8121 at 412.723 kb on + strand, within Atu8121 at 412.731 kb on - strand, within Atu8121 at 412.731 kb on - strand, within Atu8121 at 412.851 kb on + strand, within Atu8121 at 412.857 kb on + strand, within Atu8121 at 412.910 kb on - strand, within Atu8121 at 412.941 kb on - strand, within Atu8121 at 413.021 kb on + strand, within Atu8121 at 413.024 kb on - strand, within Atu8121 at 413.074 kb on - strand, within Atu8121 at 413.092 kb on + strand, within Atu8121 at 413.092 kb on + strand, within Atu8121 at 413.100 kb on - strand, within Atu8121 at 413.100 kb on - strand, within Atu8121 at 413.170 kb on + strand, within Atu8121 at 413.341 kb on - strand, within Atu8121 at 413.398 kb on - strand, within Atu8121 at 413.525 kb on + strand, within Atu8121 at 413.536 kb on - strand at 413.585 kb on + strand at 413.681 kb on + strand at 413.772 kb on - strand at 413.772 kb on - strand at 413.824 kb on + strand, within Atu0418 at 413.837 kb on - strand, within Atu0418 at 413.856 kb on - strand, within Atu0418 at 413.861 kb on + strand, within Atu0418 at 413.990 kb on + strand, within Atu0418 at 414.036 kb on + strand, within Atu0418 at 414.044 kb on - strand, within Atu0418 at 414.119 kb on + strand, within Atu0418 at 414.127 kb on - strand, within Atu0418 at 414.210 kb on + strand, within Atu0418 at 414.250 kb on - strand, within Atu0418 at 414.255 kb on - strand, within Atu0418 at 414.319 kb on - strand, within Atu0418 at 414.383 kb on + strand, within Atu0418 at 414.384 kb on - strand, within Atu0418 at 414.391 kb on - strand, within Atu0418 at 414.429 kb on - strand, within Atu0418 at 414.488 kb on + strand, within Atu0418 at 414.555 kb on - strand at 414.629 kb on + strand at 414.637 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-glutamine (C) remove 411,560 + Atu0415 0.28 +0.1 411,588 + Atu0415 0.31 +0.1 411,588 + Atu0415 0.31 +0.9 411,588 + Atu0415 0.31 -0.5 411,588 + Atu0415 0.31 -0.2 411,596 - Atu0415 0.32 -0.4 411,597 + Atu0415 0.32 -0.7 411,633 - Atu0415 0.36 -0.2 411,640 + Atu0415 0.37 +0.1 411,659 + Atu0415 0.39 -0.9 411,659 + Atu0415 0.39 -0.3 411,659 + Atu0415 0.39 +0.4 411,659 - Atu0415 0.39 -0.7 411,667 - Atu0415 0.40 +0.6 411,667 - Atu0415 0.40 -0.1 411,707 + Atu0415 0.44 -0.1 411,730 - Atu0415 0.46 -0.4 411,760 + Atu0415 0.49 +0.1 411,822 - Atu0415 0.56 +0.1 411,860 + Atu0415 0.60 +0.0 412,040 + Atu0415 0.78 +0.1 412,048 - Atu0415 0.79 +2.9 412,051 + Atu0415 0.79 -1.2 412,051 + Atu0415 0.79 +0.8 412,156 - -0.8 412,306 + +0.7 412,328 + +1.6 412,336 - +0.4 412,433 - -0.1 412,450 + +0.0 412,495 + -0.7 412,500 + -0.9 412,625 + Atu8121 0.14 +0.1 412,625 + Atu8121 0.14 +0.6 412,711 - Atu8121 0.22 +0.1 412,713 + Atu8121 0.22 +0.4 412,713 + Atu8121 0.22 +0.0 412,721 - Atu8121 0.22 -0.9 412,723 + Atu8121 0.23 -0.6 412,723 + Atu8121 0.23 +0.9 412,731 - Atu8121 0.23 +1.6 412,731 - Atu8121 0.23 -0.3 412,851 + Atu8121 0.33 +0.2 412,857 + Atu8121 0.34 +1.3 412,910 - Atu8121 0.38 -0.1 412,941 - Atu8121 0.41 +1.0 413,021 + Atu8121 0.47 -0.1 413,024 - Atu8121 0.48 +1.4 413,074 - Atu8121 0.52 +0.5 413,092 + Atu8121 0.53 -0.6 413,092 + Atu8121 0.53 +0.2 413,100 - Atu8121 0.54 +0.4 413,100 - Atu8121 0.54 +1.8 413,170 + Atu8121 0.60 +0.1 413,341 - Atu8121 0.74 +0.6 413,398 - Atu8121 0.79 -0.1 413,525 + Atu8121 0.89 +0.4 413,536 - -0.2 413,585 + -0.0 413,681 + +0.0 413,772 - -0.4 413,772 - +0.2 413,824 + Atu0418 0.14 -0.1 413,837 - Atu0418 0.15 -0.0 413,856 - Atu0418 0.18 -0.8 413,861 + Atu0418 0.18 -0.0 413,990 + Atu0418 0.33 -0.5 414,036 + Atu0418 0.38 -0.0 414,044 - Atu0418 0.39 -0.3 414,119 + Atu0418 0.47 -0.4 414,127 - Atu0418 0.48 -0.1 414,210 + Atu0418 0.58 -0.8 414,250 - Atu0418 0.62 -0.0 414,255 - Atu0418 0.63 +0.3 414,319 - Atu0418 0.70 -0.1 414,383 + Atu0418 0.77 +0.4 414,384 - Atu0418 0.77 +0.0 414,391 - Atu0418 0.78 -0.1 414,429 - Atu0418 0.83 +0.0 414,488 + Atu0418 0.89 +0.9 414,555 - -0.4 414,629 + -0.8 414,637 - +0.2
Or see this region's nucleotide sequence