Experiment: D-glutamine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu5547 and Atu5548 are separated by 34 nucleotides Atu5548 and Atu5549 are separated by 62 nucleotides
Atu5547: Atu5547 - metallo-beta-lactamase superfamily protein, at 540,651 to 541,622
Atu5547
Atu5548: Atu5548 - hypothetical protein, at 541,657 to 542,226
Atu5548
Atu5549: Atu5549 - hypothetical protein, at 542,289 to 542,816
Atu5549
Position (kb) 542
543 Strain fitness (log2 ratio) -1
0
1
2 at 541.300 kb on - strand, within Atu5547 at 541.301 kb on - strand, within Atu5547 at 541.339 kb on + strand, within Atu5547 at 541.415 kb on + strand, within Atu5547 at 541.437 kb on + strand, within Atu5547 at 541.474 kb on + strand, within Atu5547 at 541.506 kb on + strand, within Atu5547 at 541.508 kb on + strand, within Atu5547 at 541.528 kb on + strand at 541.538 kb on - strand at 541.584 kb on - strand at 541.645 kb on - strand at 541.647 kb on + strand at 541.653 kb on - strand at 541.653 kb on - strand at 541.655 kb on - strand at 541.655 kb on - strand at 541.655 kb on - strand at 541.666 kb on + strand at 541.666 kb on + strand at 541.692 kb on - strand at 541.711 kb on + strand at 541.711 kb on + strand at 541.721 kb on + strand, within Atu5548 at 541.779 kb on - strand, within Atu5548 at 541.779 kb on - strand, within Atu5548 at 541.826 kb on + strand, within Atu5548 at 541.865 kb on + strand, within Atu5548 at 541.882 kb on + strand, within Atu5548 at 541.900 kb on - strand, within Atu5548 at 541.918 kb on + strand, within Atu5548 at 541.918 kb on + strand, within Atu5548 at 541.918 kb on + strand, within Atu5548 at 541.918 kb on + strand, within Atu5548 at 541.918 kb on + strand, within Atu5548 at 541.918 kb on + strand, within Atu5548 at 541.918 kb on + strand, within Atu5548 at 541.926 kb on - strand, within Atu5548 at 541.926 kb on - strand, within Atu5548 at 541.926 kb on - strand, within Atu5548 at 541.926 kb on - strand, within Atu5548 at 542.076 kb on + strand, within Atu5548 at 542.080 kb on - strand, within Atu5548 at 542.108 kb on + strand, within Atu5548 at 542.108 kb on + strand, within Atu5548 at 542.118 kb on + strand, within Atu5548 at 542.160 kb on + strand, within Atu5548 at 542.163 kb on - strand, within Atu5548 at 542.165 kb on + strand, within Atu5548 at 542.165 kb on + strand, within Atu5548 at 542.173 kb on - strand at 542.248 kb on - strand at 542.255 kb on + strand at 542.257 kb on + strand at 542.257 kb on + strand at 542.263 kb on - strand at 542.278 kb on + strand at 542.294 kb on - strand at 542.294 kb on - strand at 542.328 kb on - strand at 542.346 kb on + strand, within Atu5549 at 542.363 kb on + strand, within Atu5549 at 542.438 kb on + strand, within Atu5549 at 542.446 kb on - strand, within Atu5549 at 542.470 kb on + strand, within Atu5549 at 542.491 kb on - strand, within Atu5549 at 542.581 kb on - strand, within Atu5549 at 542.589 kb on + strand, within Atu5549 at 542.618 kb on + strand, within Atu5549 at 542.680 kb on - strand, within Atu5549 at 542.731 kb on + strand, within Atu5549 at 542.779 kb on - strand at 542.811 kb on + strand at 542.811 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-glutamine (C) remove 541,300 - Atu5547 0.67 +0.1 541,301 - Atu5547 0.67 +0.3 541,339 + Atu5547 0.71 -0.5 541,415 + Atu5547 0.79 +0.5 541,437 + Atu5547 0.81 +0.0 541,474 + Atu5547 0.85 -0.0 541,506 + Atu5547 0.88 -1.7 541,508 + Atu5547 0.88 +0.1 541,528 + +2.7 541,538 - +0.4 541,584 - +0.3 541,645 - +0.2 541,647 + +0.1 541,653 - -0.1 541,653 - +0.9 541,655 - -0.0 541,655 - -0.7 541,655 - -1.4 541,666 + +0.1 541,666 + -0.2 541,692 - -0.6 541,711 + +0.1 541,711 + +0.1 541,721 + Atu5548 0.11 -0.2 541,779 - Atu5548 0.21 -0.0 541,779 - Atu5548 0.21 +0.5 541,826 + Atu5548 0.30 -0.1 541,865 + Atu5548 0.36 +0.1 541,882 + Atu5548 0.39 +0.3 541,900 - Atu5548 0.43 -0.3 541,918 + Atu5548 0.46 +0.9 541,918 + Atu5548 0.46 -0.1 541,918 + Atu5548 0.46 +0.1 541,918 + Atu5548 0.46 -0.7 541,918 + Atu5548 0.46 -0.1 541,918 + Atu5548 0.46 -0.0 541,918 + Atu5548 0.46 +0.3 541,926 - Atu5548 0.47 +1.3 541,926 - Atu5548 0.47 -0.1 541,926 - Atu5548 0.47 +0.5 541,926 - Atu5548 0.47 +0.1 542,076 + Atu5548 0.74 -0.1 542,080 - Atu5548 0.74 +1.0 542,108 + Atu5548 0.79 -0.0 542,108 + Atu5548 0.79 -0.2 542,118 + Atu5548 0.81 -0.2 542,160 + Atu5548 0.88 -0.3 542,163 - Atu5548 0.89 +0.3 542,165 + Atu5548 0.89 +0.5 542,165 + Atu5548 0.89 +0.7 542,173 - -0.1 542,248 - -0.5 542,255 + +0.0 542,257 + +0.0 542,257 + -0.0 542,263 - -0.5 542,278 + -0.2 542,294 - +2.1 542,294 - +0.0 542,328 - +0.0 542,346 + Atu5549 0.11 -0.7 542,363 + Atu5549 0.14 +0.3 542,438 + Atu5549 0.28 -0.2 542,446 - Atu5549 0.30 +1.1 542,470 + Atu5549 0.34 +0.2 542,491 - Atu5549 0.38 +0.2 542,581 - Atu5549 0.55 +1.8 542,589 + Atu5549 0.57 -0.2 542,618 + Atu5549 0.62 +0.4 542,680 - Atu5549 0.74 +0.8 542,731 + Atu5549 0.84 +0.6 542,779 - +0.0 542,811 + +1.5 542,811 + +1.3
Or see this region's nucleotide sequence