Strain Fitness in Agrobacterium fabrum C58 around Atu5538

Experiment: D-glutamine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu5537 and Atu5538 overlap by 4 nucleotidesAtu5538 and Atu5539 are separated by 225 nucleotides Atu5537: Atu5537 - mercuric reductase, at 532,146 to 533,507 Atu5537 Atu5538: Atu5538 - hypothetical protein, at 533,504 to 533,965 Atu5538 Atu5539: Atu5539 - HlyD family secretion protein, at 534,191 to 535,066 Atu5539 Position (kb) 533 534Strain fitness (log2 ratio) -2 -1 0 1 2at 532.559 kb on - strand, within Atu5537at 532.583 kb on - strand, within Atu5537at 532.697 kb on - strand, within Atu5537at 532.736 kb on + strand, within Atu5537at 532.736 kb on + strand, within Atu5537at 532.758 kb on + strand, within Atu5537at 532.758 kb on + strand, within Atu5537at 532.791 kb on + strand, within Atu5537at 532.829 kb on + strand, within Atu5537at 532.829 kb on + strand, within Atu5537at 532.845 kb on + strand, within Atu5537at 532.848 kb on - strand, within Atu5537at 532.918 kb on + strand, within Atu5537at 532.926 kb on - strand, within Atu5537at 532.926 kb on - strand, within Atu5537at 533.068 kb on + strand, within Atu5537at 533.074 kb on - strand, within Atu5537at 533.113 kb on + strand, within Atu5537at 533.114 kb on - strand, within Atu5537at 533.116 kb on + strand, within Atu5537at 533.116 kb on + strand, within Atu5537at 533.124 kb on - strand, within Atu5537at 533.124 kb on - strand, within Atu5537at 533.124 kb on - strand, within Atu5537at 533.124 kb on - strand, within Atu5537at 533.124 kb on - strand, within Atu5537at 533.124 kb on - strand, within Atu5537at 533.124 kb on - strand, within Atu5537at 533.137 kb on + strand, within Atu5537at 533.145 kb on + strand, within Atu5537at 533.218 kb on - strand, within Atu5537at 533.241 kb on - strand, within Atu5537at 533.263 kb on + strand, within Atu5537at 533.287 kb on + strand, within Atu5537at 533.311 kb on + strand, within Atu5537at 533.343 kb on - strand, within Atu5537at 533.356 kb on - strand, within Atu5537at 533.373 kb on - strandat 533.474 kb on - strandat 533.491 kb on + strandat 533.509 kb on - strandat 533.583 kb on - strand, within Atu5538at 533.617 kb on - strand, within Atu5538at 533.628 kb on + strand, within Atu5538at 533.660 kb on - strand, within Atu5538at 533.678 kb on + strand, within Atu5538at 533.700 kb on + strand, within Atu5538at 533.701 kb on - strand, within Atu5538at 533.735 kb on + strand, within Atu5538at 533.831 kb on - strand, within Atu5538at 533.886 kb on + strand, within Atu5538at 533.910 kb on + strand, within Atu5538at 534.047 kb on + strandat 534.062 kb on - strandat 534.081 kb on + strandat 534.084 kb on - strandat 534.084 kb on - strandat 534.089 kb on - strandat 534.091 kb on + strandat 534.143 kb on + strandat 534.187 kb on - strandat 534.187 kb on - strandat 534.225 kb on - strandat 534.225 kb on - strandat 534.246 kb on - strandat 534.303 kb on - strand, within Atu5539at 534.308 kb on - strand, within Atu5539at 534.339 kb on + strand, within Atu5539at 534.422 kb on - strand, within Atu5539at 534.422 kb on - strand, within Atu5539at 534.426 kb on + strand, within Atu5539at 534.477 kb on - strand, within Atu5539at 534.551 kb on + strand, within Atu5539at 534.597 kb on + strand, within Atu5539at 534.615 kb on + strand, within Atu5539at 534.617 kb on - strand, within Atu5539at 534.640 kb on + strand, within Atu5539at 534.715 kb on + strand, within Atu5539at 534.715 kb on - strand, within Atu5539at 534.771 kb on + strand, within Atu5539at 534.773 kb on - strand, within Atu5539at 534.940 kb on + strand, within Atu5539at 534.940 kb on + strand, within Atu5539at 534.959 kb on + strand, within Atu5539

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Per-strain Table

Position Strand Gene LocusTag Fraction D-glutamine (C)
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532,559 - Atu5537 0.30 +0.8
532,583 - Atu5537 0.32 -0.2
532,697 - Atu5537 0.40 +0.4
532,736 + Atu5537 0.43 +0.8
532,736 + Atu5537 0.43 -0.2
532,758 + Atu5537 0.45 -0.0
532,758 + Atu5537 0.45 +0.2
532,791 + Atu5537 0.47 +0.2
532,829 + Atu5537 0.50 -1.7
532,829 + Atu5537 0.50 +0.4
532,845 + Atu5537 0.51 -0.1
532,848 - Atu5537 0.52 +0.1
532,918 + Atu5537 0.57 +2.7
532,926 - Atu5537 0.57 +0.0
532,926 - Atu5537 0.57 -2.7
533,068 + Atu5537 0.68 -0.1
533,074 - Atu5537 0.68 +0.3
533,113 + Atu5537 0.71 +0.9
533,114 - Atu5537 0.71 -0.3
533,116 + Atu5537 0.71 +0.2
533,116 + Atu5537 0.71 +1.9
533,124 - Atu5537 0.72 +0.4
533,124 - Atu5537 0.72 +0.5
533,124 - Atu5537 0.72 -0.1
533,124 - Atu5537 0.72 -0.1
533,124 - Atu5537 0.72 -0.1
533,124 - Atu5537 0.72 -0.1
533,124 - Atu5537 0.72 -0.4
533,137 + Atu5537 0.73 +1.9
533,145 + Atu5537 0.73 +0.3
533,218 - Atu5537 0.79 +0.1
533,241 - Atu5537 0.80 -0.5
533,263 + Atu5537 0.82 +0.4
533,287 + Atu5537 0.84 -0.1
533,311 + Atu5537 0.86 -0.5
533,343 - Atu5537 0.88 -1.7
533,356 - Atu5537 0.89 -0.0
533,373 - +0.1
533,474 - -0.0
533,491 + +0.3
533,509 - +0.1
533,583 - Atu5538 0.17 +0.7
533,617 - Atu5538 0.24 +0.6
533,628 + Atu5538 0.27 +0.7
533,660 - Atu5538 0.34 +0.3
533,678 + Atu5538 0.38 +0.2
533,700 + Atu5538 0.42 +0.3
533,701 - Atu5538 0.43 -1.5
533,735 + Atu5538 0.50 +0.8
533,831 - Atu5538 0.71 -0.1
533,886 + Atu5538 0.83 +0.0
533,910 + Atu5538 0.88 +0.0
534,047 + +0.0
534,062 - +0.0
534,081 + -0.0
534,084 - +0.1
534,084 - +0.0
534,089 - -0.1
534,091 + +0.6
534,143 + +0.9
534,187 - +0.5
534,187 - +0.4
534,225 - +0.3
534,225 - +0.4
534,246 - +0.5
534,303 - Atu5539 0.13 -0.3
534,308 - Atu5539 0.13 -0.0
534,339 + Atu5539 0.17 +0.1
534,422 - Atu5539 0.26 -1.3
534,422 - Atu5539 0.26 -0.1
534,426 + Atu5539 0.27 +0.1
534,477 - Atu5539 0.33 +1.7
534,551 + Atu5539 0.41 -1.0
534,597 + Atu5539 0.46 +0.2
534,615 + Atu5539 0.48 +0.4
534,617 - Atu5539 0.49 -0.3
534,640 + Atu5539 0.51 +0.7
534,715 + Atu5539 0.60 +0.2
534,715 - Atu5539 0.60 -0.0
534,771 + Atu5539 0.66 +1.3
534,773 - Atu5539 0.66 +0.5
534,940 + Atu5539 0.86 +0.6
534,940 + Atu5539 0.86 +1.3
534,959 + Atu5539 0.88 +0.4

Or see this region's nucleotide sequence