Experiment: D-glutamine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3152 and Atu3153 are separated by 192 nucleotides Atu3153 and Atu3154 are separated by 125 nucleotides
Atu3152: Atu3152 - AraC family transcriptional regulator, at 160,803 to 161,693
Atu3152
Atu3153: Atu3153 - AraC family transcriptional regulator, at 161,886 to 162,740
Atu3153
Atu3154: Atu3154 - fosmidomycin resistance protein, at 162,866 to 164,062
Atu3154
Position (kb) 161
162
163 Strain fitness (log2 ratio) -1
0
1
2 at 160.942 kb on - strand, within Atu3152 at 160.963 kb on - strand, within Atu3152 at 161.048 kb on - strand, within Atu3152 at 161.144 kb on + strand, within Atu3152 at 161.240 kb on - strand, within Atu3152 at 161.244 kb on + strand, within Atu3152 at 161.244 kb on + strand, within Atu3152 at 161.276 kb on - strand, within Atu3152 at 161.456 kb on + strand, within Atu3152 at 161.512 kb on - strand, within Atu3152 at 161.682 kb on + strand at 161.693 kb on + strand at 161.824 kb on - strand at 161.851 kb on - strand at 161.867 kb on + strand at 161.892 kb on - strand at 161.899 kb on - strand at 161.900 kb on - strand at 161.953 kb on - strand at 162.076 kb on + strand, within Atu3153 at 162.084 kb on - strand, within Atu3153 at 162.212 kb on + strand, within Atu3153 at 162.242 kb on - strand, within Atu3153 at 162.481 kb on - strand, within Atu3153 at 162.496 kb on + strand, within Atu3153 at 162.515 kb on - strand, within Atu3153 at 162.521 kb on + strand, within Atu3153 at 162.533 kb on - strand, within Atu3153 at 162.549 kb on + strand, within Atu3153 at 162.557 kb on - strand, within Atu3153 at 162.598 kb on - strand, within Atu3153 at 162.620 kb on - strand, within Atu3153 at 162.630 kb on - strand, within Atu3153 at 162.642 kb on - strand, within Atu3153 at 162.689 kb on + strand at 162.694 kb on - strand at 163.022 kb on - strand, within Atu3154 at 163.084 kb on - strand, within Atu3154 at 163.106 kb on + strand, within Atu3154 at 163.143 kb on - strand, within Atu3154 at 163.158 kb on + strand, within Atu3154 at 163.169 kb on + strand, within Atu3154 at 163.197 kb on + strand, within Atu3154 at 163.280 kb on + strand, within Atu3154 at 163.339 kb on + strand, within Atu3154 at 163.371 kb on + strand, within Atu3154 at 163.423 kb on + strand, within Atu3154 at 163.431 kb on - strand, within Atu3154 at 163.431 kb on - strand, within Atu3154 at 163.446 kb on + strand, within Atu3154 at 163.514 kb on + strand, within Atu3154 at 163.514 kb on + strand, within Atu3154 at 163.514 kb on + strand, within Atu3154 at 163.549 kb on - strand, within Atu3154 at 163.595 kb on - strand, within Atu3154 at 163.726 kb on - strand, within Atu3154
Per-strain Table
Position Strand Gene LocusTag Fraction D-glutamine (C) remove 160,942 - Atu3152 0.16 -0.1 160,963 - Atu3152 0.18 +0.6 161,048 - Atu3152 0.27 +0.3 161,144 + Atu3152 0.38 +0.1 161,240 - Atu3152 0.49 -0.0 161,244 + Atu3152 0.49 +0.3 161,244 + Atu3152 0.49 -0.5 161,276 - Atu3152 0.53 -0.4 161,456 + Atu3152 0.73 +0.1 161,512 - Atu3152 0.80 -0.6 161,682 + +0.1 161,693 + +0.1 161,824 - +0.4 161,851 - +0.6 161,867 + -0.5 161,892 - -0.0 161,899 - +0.9 161,900 - +2.1 161,953 - +1.0 162,076 + Atu3153 0.22 -0.1 162,084 - Atu3153 0.23 +1.0 162,212 + Atu3153 0.38 +0.1 162,242 - Atu3153 0.42 +0.2 162,481 - Atu3153 0.70 -0.1 162,496 + Atu3153 0.71 -1.5 162,515 - Atu3153 0.74 -0.6 162,521 + Atu3153 0.74 +0.3 162,533 - Atu3153 0.76 +0.5 162,549 + Atu3153 0.78 +1.2 162,557 - Atu3153 0.78 +0.2 162,598 - Atu3153 0.83 +2.1 162,620 - Atu3153 0.86 +0.6 162,630 - Atu3153 0.87 +0.5 162,642 - Atu3153 0.88 -0.2 162,689 + +0.4 162,694 - -0.8 163,022 - Atu3154 0.13 -0.6 163,084 - Atu3154 0.18 +0.4 163,106 + Atu3154 0.20 -0.3 163,143 - Atu3154 0.23 -0.0 163,158 + Atu3154 0.24 -0.1 163,169 + Atu3154 0.25 +0.9 163,197 + Atu3154 0.28 -0.9 163,280 + Atu3154 0.35 -0.1 163,339 + Atu3154 0.40 -0.9 163,371 + Atu3154 0.42 +0.6 163,423 + Atu3154 0.47 +0.4 163,431 - Atu3154 0.47 -0.6 163,431 - Atu3154 0.47 +0.8 163,446 + Atu3154 0.48 -0.4 163,514 + Atu3154 0.54 -0.2 163,514 + Atu3154 0.54 -0.2 163,514 + Atu3154 0.54 -1.1 163,549 - Atu3154 0.57 +0.2 163,595 - Atu3154 0.61 +0.1 163,726 - Atu3154 0.72 -0.2
Or see this region's nucleotide sequence