Experiment: D-glutamine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3121 and Atu3122 are separated by 111 nucleotides Atu3122 and Atu3123 are separated by 28 nucleotides Atu3123 and Atu3124 are separated by 36 nucleotides Atu3124 and Atu3126 are separated by 738 nucleotides
Atu3121: Atu3121 - cold shock protein, at 131,190 to 131,399
Atu3121
Atu3122: Atu3122 - cold shock protein, at 131,511 to 131,801
Atu3122
Atu3123: Atu3123 - 30S ribosomal protein S21, at 131,830 to 132,066
Atu3123
Atu3124: Atu3124 - hypothetical protein, at 132,103 to 132,318
Atu3124
Atu3126: Atu3126 - hypothetical protein, at 133,057 to 133,344
Atu3126
Position (kb) 132
133 Strain fitness (log2 ratio) -1
0
1
2 at 131.346 kb on + strand, within Atu3121 at 131.376 kb on + strand, within Atu3121 at 131.384 kb on + strand at 131.465 kb on - strand at 131.507 kb on - strand at 131.582 kb on - strand, within Atu3122 at 131.602 kb on + strand, within Atu3122 at 131.702 kb on + strand, within Atu3122 at 131.737 kb on + strand, within Atu3122 at 131.737 kb on + strand, within Atu3122 at 131.738 kb on - strand, within Atu3122 at 131.758 kb on + strand, within Atu3122 at 131.978 kb on - strand, within Atu3123 at 131.978 kb on - strand, within Atu3123 at 131.978 kb on - strand, within Atu3123 at 132.025 kb on + strand, within Atu3123 at 132.100 kb on + strand at 132.143 kb on + strand, within Atu3124 at 132.153 kb on + strand, within Atu3124 at 132.219 kb on + strand, within Atu3124 at 132.233 kb on + strand, within Atu3124 at 132.584 kb on + strand at 132.610 kb on - strand at 132.689 kb on - strand at 132.689 kb on - strand at 132.781 kb on + strand at 132.876 kb on - strand at 132.897 kb on - strand at 132.931 kb on + strand at 132.987 kb on + strand at 133.040 kb on + strand at 133.107 kb on + strand, within Atu3126 at 133.126 kb on + strand, within Atu3126 at 133.148 kb on + strand, within Atu3126 at 133.148 kb on + strand, within Atu3126 at 133.178 kb on - strand, within Atu3126 at 133.289 kb on - strand, within Atu3126
Per-strain Table
Position Strand Gene LocusTag Fraction D-glutamine (C) remove 131,346 + Atu3121 0.74 -0.9 131,376 + Atu3121 0.89 +0.8 131,384 + +1.1 131,465 - -0.1 131,507 - +0.6 131,582 - Atu3122 0.24 -0.4 131,602 + Atu3122 0.31 +2.7 131,702 + Atu3122 0.66 +0.5 131,737 + Atu3122 0.78 -0.0 131,737 + Atu3122 0.78 +0.2 131,738 - Atu3122 0.78 -0.8 131,758 + Atu3122 0.85 +1.6 131,978 - Atu3123 0.62 -0.2 131,978 - Atu3123 0.62 -0.8 131,978 - Atu3123 0.62 -0.2 132,025 + Atu3123 0.82 +0.1 132,100 + -0.9 132,143 + Atu3124 0.19 +0.4 132,153 + Atu3124 0.23 +0.8 132,219 + Atu3124 0.54 -0.0 132,233 + Atu3124 0.60 +0.0 132,584 + +0.3 132,610 - +1.1 132,689 - +0.8 132,689 - +0.0 132,781 + -0.0 132,876 - +0.9 132,897 - +0.4 132,931 + +0.1 132,987 + -1.2 133,040 + +1.2 133,107 + Atu3126 0.17 -0.3 133,126 + Atu3126 0.24 -0.1 133,148 + Atu3126 0.32 -0.2 133,148 + Atu3126 0.32 +0.7 133,178 - Atu3126 0.42 -0.6 133,289 - Atu3126 0.81 +0.1
Or see this region's nucleotide sequence