Experiment: D-glutamine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3077 and Atu3078 are separated by 134 nucleotides Atu3078 and Atu3079 are separated by 9 nucleotides
Atu3077: Atu3077 - beta-lactamase, at 82,966 to 84,123
Atu3077
Atu3078: Atu3078 - LysR family transcriptional regulator, at 84,258 to 85,136
Atu3078
Atu3079: Atu3079 - chromate transport protein, at 85,146 to 86,363
Atu3079
Position (kb) 84
85
86 Strain fitness (log2 ratio) -1
0
1
2
3 at 83.262 kb on - strand, within Atu3077 at 83.339 kb on + strand, within Atu3077 at 83.426 kb on - strand, within Atu3077 at 83.479 kb on - strand, within Atu3077 at 83.543 kb on - strand, within Atu3077 at 83.752 kb on + strand, within Atu3077 at 83.803 kb on + strand, within Atu3077 at 83.847 kb on + strand, within Atu3077 at 83.920 kb on - strand, within Atu3077 at 84.065 kb on + strand at 84.065 kb on - strand at 84.080 kb on - strand at 84.149 kb on - strand at 84.195 kb on + strand at 84.347 kb on - strand, within Atu3078 at 84.433 kb on + strand, within Atu3078 at 84.441 kb on - strand, within Atu3078 at 84.453 kb on + strand, within Atu3078 at 84.523 kb on - strand, within Atu3078 at 84.727 kb on + strand, within Atu3078 at 84.737 kb on + strand, within Atu3078 at 84.822 kb on - strand, within Atu3078 at 85.010 kb on + strand, within Atu3078 at 85.016 kb on + strand, within Atu3078 at 85.120 kb on - strand at 85.121 kb on + strand at 85.144 kb on + strand at 85.156 kb on - strand at 85.182 kb on + strand at 85.182 kb on + strand at 85.190 kb on - strand at 85.249 kb on - strand at 85.288 kb on + strand, within Atu3079 at 85.467 kb on - strand, within Atu3079 at 85.473 kb on + strand, within Atu3079 at 85.503 kb on + strand, within Atu3079 at 85.504 kb on - strand, within Atu3079 at 85.608 kb on + strand, within Atu3079 at 85.690 kb on + strand, within Atu3079 at 85.693 kb on - strand, within Atu3079 at 85.698 kb on - strand, within Atu3079 at 85.721 kb on + strand, within Atu3079 at 85.782 kb on + strand, within Atu3079 at 85.782 kb on + strand, within Atu3079 at 85.814 kb on - strand, within Atu3079 at 85.944 kb on + strand, within Atu3079 at 85.990 kb on - strand, within Atu3079 at 86.108 kb on + strand, within Atu3079 at 86.108 kb on + strand, within Atu3079 at 86.108 kb on + strand, within Atu3079 at 86.108 kb on + strand, within Atu3079 at 86.113 kb on + strand, within Atu3079 at 86.113 kb on + strand, within Atu3079 at 86.113 kb on + strand, within Atu3079 at 86.113 kb on + strand, within Atu3079 at 86.113 kb on + strand, within Atu3079 at 86.116 kb on - strand, within Atu3079 at 86.116 kb on - strand, within Atu3079 at 86.116 kb on - strand, within Atu3079 at 86.121 kb on - strand, within Atu3079 at 86.121 kb on - strand, within Atu3079 at 86.121 kb on - strand, within Atu3079 at 86.121 kb on - strand, within Atu3079 at 86.129 kb on + strand, within Atu3079
Per-strain Table
Position Strand Gene LocusTag Fraction D-glutamine (C) remove 83,262 - Atu3077 0.26 -0.9 83,339 + Atu3077 0.32 -0.1 83,426 - Atu3077 0.40 -0.5 83,479 - Atu3077 0.44 -0.2 83,543 - Atu3077 0.50 -0.3 83,752 + Atu3077 0.68 -0.1 83,803 + Atu3077 0.72 +0.1 83,847 + Atu3077 0.76 +1.2 83,920 - Atu3077 0.82 +1.0 84,065 + -0.7 84,065 - -0.1 84,080 - -1.1 84,149 - +0.1 84,195 + -0.1 84,347 - Atu3078 0.10 +0.0 84,433 + Atu3078 0.20 +0.9 84,441 - Atu3078 0.21 -0.1 84,453 + Atu3078 0.22 +0.1 84,523 - Atu3078 0.30 +0.3 84,727 + Atu3078 0.53 -0.1 84,737 + Atu3078 0.54 -0.4 84,822 - Atu3078 0.64 +0.5 85,010 + Atu3078 0.86 +0.4 85,016 + Atu3078 0.86 +1.2 85,120 - +0.4 85,121 + +0.5 85,144 + +0.0 85,156 - +0.3 85,182 + +0.4 85,182 + +0.0 85,190 - -0.3 85,249 - -0.2 85,288 + Atu3079 0.12 -1.7 85,467 - Atu3079 0.26 -0.0 85,473 + Atu3079 0.27 +0.5 85,503 + Atu3079 0.29 -0.5 85,504 - Atu3079 0.29 +0.0 85,608 + Atu3079 0.38 +0.7 85,690 + Atu3079 0.45 +0.3 85,693 - Atu3079 0.45 +0.1 85,698 - Atu3079 0.45 +0.2 85,721 + Atu3079 0.47 +0.4 85,782 + Atu3079 0.52 +0.1 85,782 + Atu3079 0.52 +0.1 85,814 - Atu3079 0.55 -0.2 85,944 + Atu3079 0.66 +2.1 85,990 - Atu3079 0.69 +0.4 86,108 + Atu3079 0.79 +1.1 86,108 + Atu3079 0.79 -0.1 86,108 + Atu3079 0.79 -0.0 86,108 + Atu3079 0.79 -0.1 86,113 + Atu3079 0.79 -0.6 86,113 + Atu3079 0.79 -0.5 86,113 + Atu3079 0.79 -0.4 86,113 + Atu3079 0.79 +0.4 86,113 + Atu3079 0.79 +0.2 86,116 - Atu3079 0.80 +0.5 86,116 - Atu3079 0.80 -0.5 86,116 - Atu3079 0.80 -0.1 86,121 - Atu3079 0.80 +0.2 86,121 - Atu3079 0.80 -0.8 86,121 - Atu3079 0.80 +3.7 86,121 - Atu3079 0.80 -0.3 86,129 + Atu3079 0.81 -0.1
Or see this region's nucleotide sequence