Experiment: LB Aerobic with Spiramycin 0.0000625 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt essD and ybcS overlap by 1 nucleotides ybcS and rzpD overlap by 4 nucleotides rzpD and rzoD overlap by 242 nucleotides rzoD and borD are separated by 90 nucleotides
b0554: essD - DLP12 prophage; predicted phage lysis protein (NCBI), at 576,621 to 576,836
essD
b0555: ybcS - DLP12 prophage; predicted lysozyme (NCBI), at 576,836 to 577,333
ybcS
b0556: rzpD - DLP12 prophage; predicted murein endopeptidase (NCBI), at 577,330 to 577,791
rzpD
b4510: rzoD - DLP12 prophage; predicted lipoprotein (NCBI), at 577,550 to 577,732
rzoD
b0557: borD - DLP12 prophage; predicted lipoprotein (NCBI), at 577,823 to 578,116
borD
Position (kb) 576
577 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 575.635 kb on - strand at 575.682 kb on + strand at 575.682 kb on + strand at 575.682 kb on + strand at 575.685 kb on - strand at 575.688 kb on + strand at 575.690 kb on - strand at 575.697 kb on - strand at 575.697 kb on - strand at 575.698 kb on - strand at 575.714 kb on + strand at 575.722 kb on - strand at 575.773 kb on + strand at 575.774 kb on + strand at 575.827 kb on + strand at 575.830 kb on + strand at 575.872 kb on + strand at 575.878 kb on + strand at 575.882 kb on + strand at 575.882 kb on + strand at 575.887 kb on + strand at 575.887 kb on + strand at 575.890 kb on - strand at 575.901 kb on + strand at 575.909 kb on + strand at 575.909 kb on - strand at 575.912 kb on + strand at 575.912 kb on + strand at 575.924 kb on + strand at 575.933 kb on + strand at 575.941 kb on - strand at 575.941 kb on - strand at 575.941 kb on - strand at 575.981 kb on + strand at 575.998 kb on + strand at 575.998 kb on + strand at 575.998 kb on + strand at 576.003 kb on + strand at 576.114 kb on - strand at 576.114 kb on - strand at 576.180 kb on + strand at 576.207 kb on + strand at 576.209 kb on + strand at 576.443 kb on + strand at 576.446 kb on + strand at 576.464 kb on + strand at 576.464 kb on + strand at 576.470 kb on - strand at 576.472 kb on + strand at 576.472 kb on + strand at 576.472 kb on + strand at 576.475 kb on - strand at 576.480 kb on - strand at 576.515 kb on + strand at 576.525 kb on - strand at 576.525 kb on - strand at 576.531 kb on - strand at 576.538 kb on - strand at 576.538 kb on - strand at 576.539 kb on - strand at 576.539 kb on - strand at 576.541 kb on + strand at 576.541 kb on + strand at 576.551 kb on - strand at 576.551 kb on - strand at 576.561 kb on + strand at 576.561 kb on - strand at 576.563 kb on - strand at 576.563 kb on - strand at 576.611 kb on + strand at 576.626 kb on - strand at 576.640 kb on - strand at 576.640 kb on - strand at 576.645 kb on - strand, within essD at 576.662 kb on - strand, within essD at 576.662 kb on - strand, within essD at 576.670 kb on - strand, within essD at 576.670 kb on - strand, within essD at 576.672 kb on - strand, within essD at 576.672 kb on - strand, within essD at 576.672 kb on - strand, within essD at 576.678 kb on + strand, within essD at 576.680 kb on - strand, within essD at 576.684 kb on - strand, within essD at 576.688 kb on + strand, within essD at 576.691 kb on + strand, within essD at 576.704 kb on + strand, within essD at 576.704 kb on + strand, within essD at 576.712 kb on - strand, within essD at 576.719 kb on + strand, within essD at 576.725 kb on - strand, within essD at 576.725 kb on - strand, within essD at 576.732 kb on + strand, within essD at 576.732 kb on + strand, within essD at 576.739 kb on - strand, within essD at 576.740 kb on - strand, within essD at 576.740 kb on - strand, within essD at 576.744 kb on - strand, within essD at 576.751 kb on + strand, within essD at 576.773 kb on - strand, within essD at 576.819 kb on + strand at 576.819 kb on + strand at 576.826 kb on - strand at 576.839 kb on + strand at 576.855 kb on + strand at 576.869 kb on + strand at 576.869 kb on + strand at 576.891 kb on + strand, within ybcS at 576.891 kb on + strand, within ybcS at 576.902 kb on + strand, within ybcS at 576.920 kb on + strand, within ybcS at 576.932 kb on + strand, within ybcS at 576.932 kb on + strand, within ybcS at 576.940 kb on - strand, within ybcS at 576.940 kb on - strand, within ybcS at 576.941 kb on - strand, within ybcS at 576.941 kb on - strand, within ybcS at 576.942 kb on + strand, within ybcS at 576.956 kb on + strand, within ybcS at 576.956 kb on - strand, within ybcS at 576.975 kb on + strand, within ybcS at 576.986 kb on + strand, within ybcS at 576.986 kb on + strand, within ybcS at 576.989 kb on - strand, within ybcS at 576.990 kb on + strand, within ybcS at 576.990 kb on + strand, within ybcS at 576.990 kb on + strand, within ybcS at 576.990 kb on + strand, within ybcS at 576.990 kb on + strand, within ybcS at 576.994 kb on - strand, within ybcS at 576.994 kb on - strand, within ybcS at 576.994 kb on - strand, within ybcS at 577.024 kb on - strand, within ybcS at 577.057 kb on + strand, within ybcS at 577.072 kb on + strand, within ybcS at 577.077 kb on - strand, within ybcS at 577.117 kb on + strand, within ybcS at 577.145 kb on - strand, within ybcS at 577.146 kb on + strand, within ybcS at 577.146 kb on + strand, within ybcS at 577.156 kb on - strand, within ybcS at 577.205 kb on + strand, within ybcS at 577.227 kb on + strand, within ybcS at 577.232 kb on + strand, within ybcS at 577.243 kb on - strand, within ybcS at 577.243 kb on - strand, within ybcS at 577.285 kb on - strand at 577.337 kb on + strand at 577.337 kb on + strand at 577.384 kb on - strand, within rzpD at 577.384 kb on - strand, within rzpD at 577.386 kb on + strand, within rzpD at 577.394 kb on - strand, within rzpD at 577.394 kb on - strand, within rzpD at 577.405 kb on - strand, within rzpD at 577.408 kb on - strand, within rzpD at 577.662 kb on + strand at 577.721 kb on + strand at 577.728 kb on + strand at 577.767 kb on + strand at 577.767 kb on + strand at 577.786 kb on + strand at 577.786 kb on + strand at 577.787 kb on + strand at 577.791 kb on + strand at 577.794 kb on - strand at 577.797 kb on + strand at 577.798 kb on + strand at 577.799 kb on - strand at 577.804 kb on - strand at 577.814 kb on + strand at 577.830 kb on + strand at 577.835 kb on + strand at 577.835 kb on + strand at 577.835 kb on + strand at 577.835 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB Aerobic with Spiramycin 0.0000625 mM remove 575,635 - -0.1 575,682 + -0.9 575,682 + -0.1 575,682 + -1.5 575,685 - -0.1 575,688 + +1.1 575,690 - +1.3 575,697 - -1.9 575,697 - +0.6 575,698 - -0.7 575,714 + -0.7 575,722 - -1.9 575,773 + -0.4 575,774 + +1.0 575,827 + -1.1 575,830 + +0.2 575,872 + +2.6 575,878 + +1.2 575,882 + +0.3 575,882 + -0.2 575,887 + +0.6 575,887 + +0.1 575,890 - -0.9 575,901 + +0.4 575,909 + +0.1 575,909 - -0.5 575,912 + -1.1 575,912 + +0.6 575,924 + -0.7 575,933 + -2.4 575,941 - +1.1 575,941 - +1.0 575,941 - +0.4 575,981 + +3.2 575,998 + +0.1 575,998 + -1.5 575,998 + +0.6 576,003 + +0.6 576,114 - -0.5 576,114 - -0.9 576,180 + +0.9 576,207 + +0.4 576,209 + +0.1 576,443 + +0.5 576,446 + -0.0 576,464 + -0.1 576,464 + -0.8 576,470 - -0.4 576,472 + +0.8 576,472 + +0.7 576,472 + +0.2 576,475 - +1.6 576,480 - +0.6 576,515 + +1.6 576,525 - +0.0 576,525 - +1.2 576,531 - +0.1 576,538 - -2.7 576,538 - -0.1 576,539 - -0.1 576,539 - +0.8 576,541 + +0.3 576,541 + +0.6 576,551 - +0.3 576,551 - +1.2 576,561 + -1.9 576,561 - +0.8 576,563 - +0.3 576,563 - +0.7 576,611 + -0.3 576,626 - +0.3 576,640 - -0.7 576,640 - +0.2 576,645 - essD b0554 0.11 +0.3 576,662 - essD b0554 0.19 -0.1 576,662 - essD b0554 0.19 -0.3 576,670 - essD b0554 0.23 +0.2 576,670 - essD b0554 0.23 +0.2 576,672 - essD b0554 0.24 +0.0 576,672 - essD b0554 0.24 +0.3 576,672 - essD b0554 0.24 -0.5 576,678 + essD b0554 0.26 -0.5 576,680 - essD b0554 0.27 -0.5 576,684 - essD b0554 0.29 +0.3 576,688 + essD b0554 0.31 +0.5 576,691 + essD b0554 0.32 +0.3 576,704 + essD b0554 0.38 -0.5 576,704 + essD b0554 0.38 -0.3 576,712 - essD b0554 0.42 +0.6 576,719 + essD b0554 0.45 -0.4 576,725 - essD b0554 0.48 -0.0 576,725 - essD b0554 0.48 +0.2 576,732 + essD b0554 0.51 -0.7 576,732 + essD b0554 0.51 -0.4 576,739 - essD b0554 0.55 +0.6 576,740 - essD b0554 0.55 +0.4 576,740 - essD b0554 0.55 +0.1 576,744 - essD b0554 0.57 -0.3 576,751 + essD b0554 0.60 -0.7 576,773 - essD b0554 0.70 +1.8 576,819 + +0.6 576,819 + +2.0 576,826 - -1.0 576,839 + +0.8 576,855 + -1.0 576,869 + +0.5 576,869 + +0.4 576,891 + ybcS b0555 0.11 -0.4 576,891 + ybcS b0555 0.11 +2.2 576,902 + ybcS b0555 0.13 -1.8 576,920 + ybcS b0555 0.17 -0.4 576,932 + ybcS b0555 0.19 -0.1 576,932 + ybcS b0555 0.19 +1.0 576,940 - ybcS b0555 0.21 -1.6 576,940 - ybcS b0555 0.21 -0.2 576,941 - ybcS b0555 0.21 -0.2 576,941 - ybcS b0555 0.21 -0.4 576,942 + ybcS b0555 0.21 -0.3 576,956 + ybcS b0555 0.24 +0.6 576,956 - ybcS b0555 0.24 -0.2 576,975 + ybcS b0555 0.28 +1.1 576,986 + ybcS b0555 0.30 +0.4 576,986 + ybcS b0555 0.30 -0.3 576,989 - ybcS b0555 0.31 +1.1 576,990 + ybcS b0555 0.31 +3.2 576,990 + ybcS b0555 0.31 -0.7 576,990 + ybcS b0555 0.31 +0.9 576,990 + ybcS b0555 0.31 +1.6 576,990 + ybcS b0555 0.31 +0.2 576,994 - ybcS b0555 0.32 -0.7 576,994 - ybcS b0555 0.32 -0.0 576,994 - ybcS b0555 0.32 -0.9 577,024 - ybcS b0555 0.38 -1.4 577,057 + ybcS b0555 0.44 -1.4 577,072 + ybcS b0555 0.47 -0.1 577,077 - ybcS b0555 0.48 -1.2 577,117 + ybcS b0555 0.56 -0.2 577,145 - ybcS b0555 0.62 -0.3 577,146 + ybcS b0555 0.62 -2.2 577,146 + ybcS b0555 0.62 +0.4 577,156 - ybcS b0555 0.64 -1.9 577,205 + ybcS b0555 0.74 -0.3 577,227 + ybcS b0555 0.79 +0.8 577,232 + ybcS b0555 0.80 -0.8 577,243 - ybcS b0555 0.82 -0.4 577,243 - ybcS b0555 0.82 +1.1 577,285 - +1.6 577,337 + +0.3 577,337 + -1.6 577,384 - rzpD b0556 0.12 +1.6 577,384 - rzpD b0556 0.12 +0.2 577,386 + rzpD b0556 0.12 -0.2 577,394 - rzpD b0556 0.14 +1.0 577,394 - rzpD b0556 0.14 +1.2 577,405 - rzpD b0556 0.16 +1.1 577,408 - rzpD b0556 0.17 -0.6 577,662 + -0.8 577,721 + +0.6 577,728 + +0.0 577,767 + -0.1 577,767 + -0.4 577,786 + +0.1 577,786 + +1.5 577,787 + -0.0 577,791 + +0.3 577,794 - +0.7 577,797 + +0.6 577,798 + +1.4 577,799 - +0.3 577,804 - +2.8 577,814 + +0.2 577,830 + -0.5 577,835 + -0.4 577,835 + +0.3 577,835 + +0.4 577,835 + -0.6
Or see this region's nucleotide sequence