Experiment: L-Alanine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_4866 and PP_4867 are separated by 154 nucleotides PP_4867 and PP_4868 are separated by 509 nucleotides
PP_4866: PP_4866 - High-affinity branched-chain amino acid transport system permease protein BraD, at 5,532,269 to 5,533,183
_4866
PP_4867: PP_4867 - branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein (braC-like), at 5,533,338 to 5,534,474
_4867
PP_4868: PP_4868 - Nicotinate phosphoribosyltransferase, at 5,534,984 to 5,536,192
_4868
Position (kb) 5533
5534
5535 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 5532.361 kb on - strand, within PP_4866 at 5532.498 kb on + strand, within PP_4866 at 5532.498 kb on + strand, within PP_4866 at 5532.498 kb on + strand, within PP_4866 at 5532.499 kb on - strand, within PP_4866 at 5532.499 kb on - strand, within PP_4866 at 5532.516 kb on + strand at 5532.516 kb on + strand, within PP_4866 at 5532.516 kb on + strand, within PP_4866 at 5532.516 kb on + strand, within PP_4866 at 5532.517 kb on - strand, within PP_4866 at 5532.517 kb on - strand, within PP_4866 at 5532.576 kb on + strand at 5532.576 kb on + strand, within PP_4866 at 5532.577 kb on - strand, within PP_4866 at 5532.666 kb on + strand, within PP_4866 at 5532.666 kb on + strand, within PP_4866 at 5532.666 kb on + strand, within PP_4866 at 5532.666 kb on + strand, within PP_4866 at 5532.667 kb on - strand, within PP_4866 at 5532.678 kb on + strand, within PP_4866 at 5532.679 kb on - strand, within PP_4866 at 5532.679 kb on - strand, within PP_4866 at 5532.730 kb on + strand, within PP_4866 at 5532.731 kb on - strand, within PP_4866 at 5532.731 kb on - strand, within PP_4866 at 5532.732 kb on + strand, within PP_4866 at 5532.732 kb on + strand, within PP_4866 at 5532.732 kb on + strand, within PP_4866 at 5532.732 kb on + strand, within PP_4866 at 5532.733 kb on - strand, within PP_4866 at 5532.733 kb on - strand, within PP_4866 at 5532.892 kb on + strand, within PP_4866 at 5532.893 kb on - strand, within PP_4866 at 5532.893 kb on - strand, within PP_4866 at 5532.906 kb on + strand, within PP_4866 at 5532.906 kb on + strand, within PP_4866 at 5532.934 kb on - strand, within PP_4866 at 5533.006 kb on - strand, within PP_4866 at 5533.053 kb on + strand, within PP_4866 at 5533.053 kb on + strand, within PP_4866 at 5533.053 kb on + strand, within PP_4866 at 5533.054 kb on - strand, within PP_4866 at 5533.054 kb on - strand, within PP_4866 at 5533.054 kb on - strand, within PP_4866 at 5533.054 kb on - strand, within PP_4866 at 5533.054 kb on - strand, within PP_4866 at 5533.095 kb on + strand at 5533.095 kb on + strand at 5533.095 kb on + strand at 5533.095 kb on + strand at 5533.096 kb on - strand at 5533.096 kb on - strand at 5533.108 kb on - strand at 5533.108 kb on - strand at 5533.108 kb on - strand at 5533.275 kb on + strand at 5533.275 kb on + strand at 5533.282 kb on - strand at 5533.291 kb on + strand at 5533.340 kb on - strand at 5533.364 kb on - strand at 5533.364 kb on - strand at 5533.387 kb on + strand at 5533.388 kb on - strand at 5533.396 kb on + strand at 5533.397 kb on - strand at 5533.547 kb on - strand, within PP_4867 at 5533.552 kb on + strand, within PP_4867 at 5533.553 kb on - strand, within PP_4867 at 5533.562 kb on - strand, within PP_4867 at 5533.651 kb on + strand, within PP_4867 at 5533.651 kb on + strand, within PP_4867 at 5533.651 kb on + strand, within PP_4867 at 5533.652 kb on - strand, within PP_4867 at 5533.652 kb on - strand, within PP_4867 at 5533.652 kb on - strand, within PP_4867 at 5533.652 kb on - strand, within PP_4867 at 5533.666 kb on + strand, within PP_4867 at 5533.667 kb on - strand, within PP_4867 at 5533.667 kb on - strand, within PP_4867 at 5533.801 kb on + strand, within PP_4867 at 5533.801 kb on + strand, within PP_4867 at 5533.820 kb on + strand, within PP_4867 at 5533.879 kb on + strand, within PP_4867 at 5533.880 kb on - strand, within PP_4867 at 5534.002 kb on + strand, within PP_4867 at 5534.003 kb on - strand, within PP_4867 at 5534.018 kb on + strand, within PP_4867 at 5534.128 kb on + strand, within PP_4867 at 5534.128 kb on + strand, within PP_4867 at 5534.128 kb on + strand, within PP_4867 at 5534.128 kb on + strand, within PP_4867 at 5534.129 kb on - strand, within PP_4867 at 5534.129 kb on - strand, within PP_4867 at 5534.129 kb on - strand, within PP_4867 at 5534.130 kb on + strand, within PP_4867 at 5534.130 kb on + strand, within PP_4867 at 5534.130 kb on + strand, within PP_4867 at 5534.131 kb on - strand, within PP_4867 at 5534.131 kb on - strand, within PP_4867 at 5534.332 kb on + strand, within PP_4867 at 5534.332 kb on + strand, within PP_4867 at 5534.332 kb on + strand, within PP_4867 at 5534.333 kb on - strand, within PP_4867 at 5534.404 kb on + strand at 5534.426 kb on + strand at 5534.427 kb on - strand at 5534.427 kb on - strand at 5534.427 kb on - strand at 5534.430 kb on + strand at 5534.510 kb on - strand at 5534.510 kb on - strand at 5534.510 kb on - strand at 5534.510 kb on - strand at 5534.616 kb on - strand at 5534.660 kb on + strand at 5534.660 kb on + strand at 5534.661 kb on - strand at 5534.661 kb on - strand at 5534.712 kb on + strand at 5534.713 kb on - strand at 5534.713 kb on - strand at 5534.774 kb on + strand at 5534.868 kb on + strand at 5534.869 kb on - strand at 5534.869 kb on - strand at 5535.044 kb on + strand at 5535.044 kb on + strand at 5535.140 kb on + strand, within PP_4868 at 5535.141 kb on - strand, within PP_4868 at 5535.282 kb on - strand, within PP_4868 at 5535.388 kb on - strand, within PP_4868 at 5535.388 kb on - strand, within PP_4868 at 5535.388 kb on - strand, within PP_4868 at 5535.388 kb on - strand, within PP_4868 at 5535.443 kb on + strand, within PP_4868 at 5535.444 kb on - strand, within PP_4868
Per-strain Table
Position Strand Gene LocusTag Fraction L-Alanine (C) remove 5,532,361 - PP_4866 0.10 -1.7 5,532,498 + PP_4866 0.25 -2.5 5,532,498 + PP_4866 0.25 -0.9 5,532,498 + PP_4866 0.25 -0.0 5,532,499 - PP_4866 0.25 -1.7 5,532,499 - PP_4866 0.25 -1.8 5,532,516 + +1.4 5,532,516 + PP_4866 0.27 -4.3 5,532,516 + PP_4866 0.27 -3.0 5,532,516 + PP_4866 0.27 -1.4 5,532,517 - PP_4866 0.27 -3.3 5,532,517 - PP_4866 0.27 -3.0 5,532,576 + +1.4 5,532,576 + PP_4866 0.34 -1.9 5,532,577 - PP_4866 0.34 -0.7 5,532,666 + PP_4866 0.43 -2.4 5,532,666 + PP_4866 0.43 -1.5 5,532,666 + PP_4866 0.43 -0.7 5,532,666 + PP_4866 0.43 -3.0 5,532,667 - PP_4866 0.43 -1.5 5,532,678 + PP_4866 0.45 +1.4 5,532,679 - PP_4866 0.45 -0.3 5,532,679 - PP_4866 0.45 -1.0 5,532,730 + PP_4866 0.50 -2.2 5,532,731 - PP_4866 0.50 -1.2 5,532,731 - PP_4866 0.50 -1.4 5,532,732 + PP_4866 0.51 +0.3 5,532,732 + PP_4866 0.51 +0.8 5,532,732 + PP_4866 0.51 +0.1 5,532,732 + PP_4866 0.51 -0.2 5,532,733 - PP_4866 0.51 -1.8 5,532,733 - PP_4866 0.51 -2.3 5,532,892 + PP_4866 0.68 -1.6 5,532,893 - PP_4866 0.68 -0.6 5,532,893 - PP_4866 0.68 -1.2 5,532,906 + PP_4866 0.70 -2.4 5,532,906 + PP_4866 0.70 -1.3 5,532,934 - PP_4866 0.73 -0.4 5,533,006 - PP_4866 0.81 -2.6 5,533,053 + PP_4866 0.86 -2.8 5,533,053 + PP_4866 0.86 -1.4 5,533,053 + PP_4866 0.86 -0.9 5,533,054 - PP_4866 0.86 -1.6 5,533,054 - PP_4866 0.86 -1.9 5,533,054 - PP_4866 0.86 -2.2 5,533,054 - PP_4866 0.86 -1.3 5,533,054 - PP_4866 0.86 -1.4 5,533,095 + -1.6 5,533,095 + -1.6 5,533,095 + -0.1 5,533,095 + +0.3 5,533,096 - -0.3 5,533,096 - -2.5 5,533,108 - -1.4 5,533,108 - -0.7 5,533,108 - -1.3 5,533,275 + -0.5 5,533,275 + -1.9 5,533,282 - -1.9 5,533,291 + -1.8 5,533,340 - -0.4 5,533,364 - -2.6 5,533,364 - -2.2 5,533,387 + -1.3 5,533,388 - -0.2 5,533,396 + -0.4 5,533,397 - -1.4 5,533,547 - PP_4867 0.18 +0.7 5,533,552 + PP_4867 0.19 -0.2 5,533,553 - PP_4867 0.19 -0.6 5,533,562 - PP_4867 0.20 +0.3 5,533,651 + PP_4867 0.28 -1.9 5,533,651 + PP_4867 0.28 -2.1 5,533,651 + PP_4867 0.28 -1.0 5,533,652 - PP_4867 0.28 -2.2 5,533,652 - PP_4867 0.28 -1.3 5,533,652 - PP_4867 0.28 -1.1 5,533,652 - PP_4867 0.28 -2.2 5,533,666 + PP_4867 0.29 -1.6 5,533,667 - PP_4867 0.29 -1.4 5,533,667 - PP_4867 0.29 -2.0 5,533,801 + PP_4867 0.41 -2.2 5,533,801 + PP_4867 0.41 -1.1 5,533,820 + PP_4867 0.42 -2.1 5,533,879 + PP_4867 0.48 -0.1 5,533,880 - PP_4867 0.48 -1.2 5,534,002 + PP_4867 0.58 -1.2 5,534,003 - PP_4867 0.58 -2.3 5,534,018 + PP_4867 0.60 +0.2 5,534,128 + PP_4867 0.69 -0.0 5,534,128 + PP_4867 0.69 -1.1 5,534,128 + PP_4867 0.69 -2.8 5,534,128 + PP_4867 0.69 +0.1 5,534,129 - PP_4867 0.70 -0.9 5,534,129 - PP_4867 0.70 -0.7 5,534,129 - PP_4867 0.70 +0.3 5,534,130 + PP_4867 0.70 -1.0 5,534,130 + PP_4867 0.70 -0.9 5,534,130 + PP_4867 0.70 +0.1 5,534,131 - PP_4867 0.70 -1.6 5,534,131 - PP_4867 0.70 -3.2 5,534,332 + PP_4867 0.87 +0.6 5,534,332 + PP_4867 0.87 -1.5 5,534,332 + PP_4867 0.87 -2.1 5,534,333 - PP_4867 0.88 -0.7 5,534,404 + -1.2 5,534,426 + -3.3 5,534,427 - +0.3 5,534,427 - -0.3 5,534,427 - -0.5 5,534,430 + -2.9 5,534,510 - +1.0 5,534,510 - -1.1 5,534,510 - +2.0 5,534,510 - -0.2 5,534,616 - -1.3 5,534,660 + -2.6 5,534,660 + -2.0 5,534,661 - +0.7 5,534,661 - +0.4 5,534,712 + +1.7 5,534,713 - -0.2 5,534,713 - -0.6 5,534,774 + -0.4 5,534,868 + -1.2 5,534,869 - +1.0 5,534,869 - +0.5 5,535,044 + +0.1 5,535,044 + -0.6 5,535,140 + PP_4868 0.13 +1.1 5,535,141 - PP_4868 0.13 -0.9 5,535,282 - PP_4868 0.25 -0.5 5,535,388 - PP_4868 0.33 -0.4 5,535,388 - PP_4868 0.33 -0.2 5,535,388 - PP_4868 0.33 +2.2 5,535,388 - PP_4868 0.33 +0.7 5,535,443 + PP_4868 0.38 -0.4 5,535,444 - PP_4868 0.38 -0.1
Or see this region's nucleotide sequence