Strain Fitness in Pseudomonas putida KT2440 around PP_4865

Experiment: L-Alanine (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Alanine (C)
5,529,996	-		PP_4863	0.86	-1.0
5,530,012	+		PP_4863	0.88	-3.4
5,530,053	+				-3.2
5,530,053	+				-2.6
5,530,054	-				-0.7
5,530,054	-				-1.4
5,530,096	+				-0.1
5,530,096	+				-0.9
5,530,097	-				-1.9
5,530,125	-				-1.0
5,530,206	+		PP_4864	0.13	-1.2
5,530,409	+		PP_4864	0.36	-0.4
5,530,409	+		PP_4864	0.36	-0.5
5,530,456	+		PP_4864	0.41	-1.9
5,530,456	+		PP_4864	0.41	-1.2
5,530,456	+		PP_4864	0.41	-1.7
5,530,456	+		PP_4864	0.41	-2.4
5,530,457	-		PP_4864	0.42	-1.7
5,530,457	-		PP_4864	0.42	+0.2
5,530,469	+		PP_4864	0.43	-0.3
5,530,470	-		PP_4864	0.43	-2.0
5,530,656	+		PP_4864	0.64	-1.3
5,530,673	+		PP_4864	0.66	-0.6
5,530,674	-		PP_4864	0.66	-1.5
5,530,676	+		PP_4864	0.67	-1.0
5,530,676	+		PP_4864	0.67	-1.6
5,530,676	+		PP_4864	0.67	-1.5
5,530,677	-		PP_4864	0.67	-2.9
5,530,677	-		PP_4864	0.67	-2.0
5,530,677	-		PP_4864	0.67	-1.1
5,530,680	+		PP_4864	0.67	-3.2
5,530,680	+		PP_4864	0.67	-2.1
5,530,680	+		PP_4864	0.67	-1.7
5,530,680	+		PP_4864	0.67	-0.0
5,530,680	+		PP_4864	0.67	-1.9
5,530,680	+		PP_4864	0.67	-3.3
5,530,680	+		PP_4864	0.67	-1.7
5,530,680	+		PP_4864	0.67	-0.6
5,530,681	-		PP_4864	0.67	+0.9
5,530,681	-		PP_4864	0.67	-1.3
5,530,681	-		PP_4864	0.67	-3.7
5,530,681	-		PP_4864	0.67	-0.7
5,530,681	-		PP_4864	0.67	-1.1
5,530,681	-		PP_4864	0.67	-1.8
5,530,681	-		PP_4864	0.67	-0.5
5,530,782	+		PP_4864	0.79	-1.3
5,530,782	+		PP_4864	0.79	-1.0
5,530,782	+		PP_4864	0.79	-1.4
5,530,782	+		PP_4864	0.79	-2.2
5,530,783	-		PP_4864	0.79	-2.2
5,530,825	+		PP_4864	0.84	-2.9
5,530,826	-		PP_4864	0.84	-1.7
5,530,867	+		PP_4864	0.88	-2.9
5,530,868	-		PP_4864	0.88	-1.8
5,530,868	-		PP_4864	0.88	+0.0
5,530,956	+				-2.1
5,530,956	+				-1.6
5,530,956	+				-1.5
5,530,956	+				-3.2
5,530,957	-				-0.1
5,530,982	+				-1.3
5,530,982	+				-2.3
5,530,983	-				-0.4
5,531,233	+		PP_4865	0.20	-0.4
5,531,234	-		PP_4865	0.21	-1.0
5,531,401	+		PP_4865	0.33	-0.5
5,531,401	+		PP_4865	0.33	-2.0
5,531,401	+		PP_4865	0.33	-1.3
5,531,401	+		PP_4865	0.33	-2.4
5,531,401	+		PP_4865	0.33	-0.4
5,531,401	+		PP_4865	0.33	-1.1
5,531,401	+		PP_4865	0.33	-2.2
5,531,401	+		PP_4865	0.33	-0.8
5,531,402	-		PP_4865	0.33	-1.4
5,531,402	-		PP_4865	0.33	-1.6
5,531,402	-				+0.6
5,531,468	-		PP_4865	0.38	-0.7
5,531,468	-		PP_4865	0.38	-2.6
5,531,647	+		PP_4865	0.52	-2.1
5,531,647	+		PP_4865	0.52	-0.5
5,531,648	-		PP_4865	0.52	-1.6
5,531,750	-		PP_4865	0.60	-1.9
5,531,773	+		PP_4865	0.62	-2.1
5,531,788	+		PP_4865	0.63	-1.3
5,531,788	+		PP_4865	0.63	+0.4
5,531,788	+		PP_4865	0.63	-1.8
5,531,788	+		PP_4865	0.63	-2.1
5,531,789	-		PP_4865	0.63	+0.1
5,531,789	-		PP_4865	0.63	-2.4
5,531,860	-		PP_4865	0.68	+1.2
5,531,860	-		PP_4865	0.68	-0.9
5,531,860	-		PP_4865	0.68	-0.5
5,531,863	+		PP_4865	0.69	-2.8
5,531,863	+		PP_4865	0.69	-3.3
5,531,863	+		PP_4865	0.69	-1.1
5,531,864	-		PP_4865	0.69	-1.8
5,531,864	-		PP_4865	0.69	-0.2
5,531,864	-				-0.4
5,531,864	-		PP_4865	0.69	-2.9
5,531,864	-		PP_4865	0.69	-1.6
5,531,897	-		PP_4865	0.71	-2.4
5,531,897	-		PP_4865	0.71	-2.0
5,531,897	-		PP_4865	0.71	-1.6
5,531,897	-		PP_4865	0.71	-1.2
5,531,953	+		PP_4865	0.76	+0.1
5,531,953	+		PP_4865	0.76	-1.0
5,531,953	+		PP_4865	0.76	-3.3
5,531,954	-		PP_4865	0.76	-2.1
5,531,954	-		PP_4865	0.76	-0.7
5,531,971	+		PP_4865	0.77	-0.2
5,532,170	+				-2.5
5,532,171	-				-2.1
5,532,216	-				-1.8
5,532,242	+				-0.8
5,532,242	+				-1.6
5,532,243	-				-0.7
5,532,319	+				-1.7
5,532,319	+				-1.2
5,532,361	-		PP_4866	0.10	-1.7
5,532,498	+		PP_4866	0.25	-2.5
5,532,498	+		PP_4866	0.25	-0.9
5,532,498	+		PP_4866	0.25	-0.0
5,532,499	-		PP_4866	0.25	-1.7
5,532,499	-		PP_4866	0.25	-1.8
5,532,516	+				+1.4
5,532,516	+		PP_4866	0.27	-4.3
5,532,516	+		PP_4866	0.27	-3.0
5,532,516	+		PP_4866	0.27	-1.4
5,532,517	-		PP_4866	0.27	-3.3
5,532,517	-		PP_4866	0.27	-3.0
5,532,576	+				+1.4
5,532,576	+		PP_4866	0.34	-1.9
5,532,577	-		PP_4866	0.34	-0.7
5,532,666	+		PP_4866	0.43	-2.4
5,532,666	+		PP_4866	0.43	-1.5
5,532,666	+		PP_4866	0.43	-0.7
5,532,666	+		PP_4866	0.43	-3.0
5,532,667	-		PP_4866	0.43	-1.5
5,532,678	+		PP_4866	0.45	+1.4
5,532,679	-		PP_4866	0.45	-0.3
5,532,679	-		PP_4866	0.45	-1.0
5,532,730	+		PP_4866	0.50	-2.2
5,532,731	-		PP_4866	0.50	-1.2
5,532,731	-		PP_4866	0.50	-1.4
5,532,732	+		PP_4866	0.51	+0.3
5,532,732	+		PP_4866	0.51	+0.8
5,532,732	+		PP_4866	0.51	+0.1
5,532,732	+		PP_4866	0.51	-0.2
5,532,733	-		PP_4866	0.51	-1.8
5,532,733	-		PP_4866	0.51	-2.3
5,532,892	+		PP_4866	0.68	-1.6
5,532,893	-		PP_4866	0.68	-0.6
5,532,893	-		PP_4866	0.68	-1.2
5,532,906	+		PP_4866	0.70	-2.4
5,532,906	+		PP_4866	0.70	-1.3
5,532,934	-		PP_4866	0.73	-0.4
5,533,006	-		PP_4866	0.81	-2.6
5,533,053	+		PP_4866	0.86	-2.8
5,533,053	+		PP_4866	0.86	-1.4
5,533,053	+		PP_4866	0.86	-0.9
5,533,054	-		PP_4866	0.86	-1.6
5,533,054	-		PP_4866	0.86	-1.9
5,533,054	-		PP_4866	0.86	-2.2
5,533,054	-		PP_4866	0.86	-1.3
5,533,054	-		PP_4866	0.86	-1.4
5,533,095	+				-1.6
5,533,095	+				-1.6
5,533,095	+				-0.1
5,533,095	+				+0.3
5,533,096	-				-0.3
5,533,096	-				-2.5
5,533,108	-				-1.4
5,533,108	-				-0.7
5,533,108	-				-1.3