Experiment: L-Alanine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_4862 and PP_4863 are separated by 593 nucleotides PP_4863 and PP_4864 overlap by 4 nucleotides PP_4864 and PP_4865 overlap by 4 nucleotides
PP_4862: PP_4862 - 3-hydroxy acid dehydrogenase, NADP-dependent / malonic semialdehyde reductase, at 5,528,022 to 5,528,786
_4862
PP_4863: PP_4863 - high-affinity branched-chain amino acid transporter, ATP-binding, at 5,529,380 to 5,530,096
_4863
PP_4864: PP_4864 - High-affinity branched-chain amino acid transport ATP-binding protein BraF, at 5,530,093 to 5,530,968
_4864
PP_4865: PP_4865 - High-affinity branched-chain amino acid transport system permease protein BraE, at 5,530,965 to 5,532,272
_4865
Position (kb)
5529
5530
5531 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 5528.440 kb on + strand, within PP_4862 at 5528.440 kb on + strand, within PP_4862 at 5528.440 kb on + strand, within PP_4862 at 5528.441 kb on - strand, within PP_4862 at 5528.441 kb on - strand, within PP_4862 at 5528.441 kb on - strand, within PP_4862 at 5528.441 kb on - strand, within PP_4862 at 5528.441 kb on - strand, within PP_4862 at 5528.441 kb on - strand, within PP_4862 at 5528.441 kb on - strand, within PP_4862 at 5528.582 kb on + strand, within PP_4862 at 5528.582 kb on + strand, within PP_4862 at 5528.582 kb on + strand, within PP_4862 at 5528.582 kb on + strand, within PP_4862 at 5528.583 kb on - strand, within PP_4862 at 5528.697 kb on + strand, within PP_4862 at 5528.698 kb on - strand, within PP_4862 at 5528.698 kb on - strand, within PP_4862 at 5528.773 kb on - strand at 5528.803 kb on + strand at 5528.804 kb on - strand at 5528.804 kb on - strand at 5528.804 kb on - strand at 5528.923 kb on + strand at 5528.924 kb on - strand at 5528.924 kb on - strand at 5528.979 kb on + strand at 5528.980 kb on - strand at 5529.164 kb on - strand at 5529.253 kb on + strand at 5529.301 kb on + strand at 5529.301 kb on + strand at 5529.301 kb on + strand at 5529.302 kb on - strand at 5529.302 kb on - strand at 5529.397 kb on - strand at 5529.474 kb on + strand, within PP_4863 at 5529.474 kb on + strand, within PP_4863 at 5529.474 kb on + strand, within PP_4863 at 5529.474 kb on + strand, within PP_4863 at 5529.475 kb on - strand, within PP_4863 at 5529.475 kb on - strand, within PP_4863 at 5529.475 kb on - strand, within PP_4863 at 5529.475 kb on - strand, within PP_4863 at 5529.529 kb on + strand, within PP_4863 at 5529.529 kb on + strand, within PP_4863 at 5529.529 kb on + strand, within PP_4863 at 5529.530 kb on - strand, within PP_4863 at 5529.530 kb on - strand, within PP_4863 at 5529.530 kb on - strand, within PP_4863 at 5529.530 kb on - strand, within PP_4863 at 5529.530 kb on - strand, within PP_4863 at 5529.530 kb on - strand, within PP_4863 at 5529.735 kb on + strand, within PP_4863 at 5529.735 kb on + strand, within PP_4863 at 5529.735 kb on + strand at 5529.736 kb on - strand, within PP_4863 at 5529.736 kb on - strand, within PP_4863 at 5529.736 kb on - strand, within PP_4863 at 5529.736 kb on - strand, within PP_4863 at 5529.739 kb on + strand, within PP_4863 at 5529.739 kb on + strand, within PP_4863 at 5529.739 kb on + strand, within PP_4863 at 5529.739 kb on + strand, within PP_4863 at 5529.740 kb on - strand, within PP_4863 at 5529.740 kb on - strand, within PP_4863 at 5529.740 kb on - strand, within PP_4863 at 5529.740 kb on - strand, within PP_4863 at 5529.784 kb on + strand, within PP_4863 at 5529.784 kb on + strand, within PP_4863 at 5529.785 kb on - strand, within PP_4863 at 5529.870 kb on + strand, within PP_4863 at 5529.871 kb on - strand, within PP_4863 at 5529.871 kb on - strand, within PP_4863 at 5529.913 kb on + strand, within PP_4863 at 5529.913 kb on + strand, within PP_4863 at 5529.913 kb on + strand, within PP_4863 at 5529.913 kb on + strand, within PP_4863 at 5529.913 kb on + strand, within PP_4863 at 5529.914 kb on - strand, within PP_4863 at 5529.914 kb on - strand, within PP_4863 at 5529.914 kb on - strand, within PP_4863 at 5529.996 kb on - strand, within PP_4863 at 5530.012 kb on + strand, within PP_4863 at 5530.053 kb on + strand at 5530.053 kb on + strand at 5530.054 kb on - strand at 5530.054 kb on - strand at 5530.096 kb on + strand at 5530.096 kb on + strand at 5530.097 kb on - strand at 5530.125 kb on - strand at 5530.206 kb on + strand, within PP_4864 at 5530.409 kb on + strand, within PP_4864 at 5530.409 kb on + strand, within PP_4864 at 5530.456 kb on + strand, within PP_4864 at 5530.456 kb on + strand, within PP_4864 at 5530.456 kb on + strand, within PP_4864 at 5530.456 kb on + strand, within PP_4864 at 5530.457 kb on - strand, within PP_4864 at 5530.457 kb on - strand, within PP_4864 at 5530.469 kb on + strand, within PP_4864 at 5530.470 kb on - strand, within PP_4864 at 5530.656 kb on + strand, within PP_4864 at 5530.673 kb on + strand, within PP_4864 at 5530.674 kb on - strand, within PP_4864 at 5530.676 kb on + strand, within PP_4864 at 5530.676 kb on + strand, within PP_4864 at 5530.676 kb on + strand, within PP_4864 at 5530.677 kb on - strand, within PP_4864 at 5530.677 kb on - strand, within PP_4864 at 5530.677 kb on - strand, within PP_4864 at 5530.680 kb on + strand, within PP_4864 at 5530.680 kb on + strand, within PP_4864 at 5530.680 kb on + strand, within PP_4864 at 5530.680 kb on + strand, within PP_4864 at 5530.680 kb on + strand, within PP_4864 at 5530.680 kb on + strand, within PP_4864 at 5530.680 kb on + strand, within PP_4864 at 5530.680 kb on + strand, within PP_4864 at 5530.681 kb on - strand, within PP_4864 at 5530.681 kb on - strand, within PP_4864 at 5530.681 kb on - strand, within PP_4864 at 5530.681 kb on - strand, within PP_4864 at 5530.681 kb on - strand, within PP_4864 at 5530.681 kb on - strand, within PP_4864 at 5530.681 kb on - strand, within PP_4864 at 5530.782 kb on + strand, within PP_4864 at 5530.782 kb on + strand, within PP_4864 at 5530.782 kb on + strand, within PP_4864 at 5530.782 kb on + strand, within PP_4864 at 5530.783 kb on - strand, within PP_4864 at 5530.825 kb on + strand, within PP_4864 at 5530.826 kb on - strand, within PP_4864 at 5530.867 kb on + strand, within PP_4864 at 5530.868 kb on - strand, within PP_4864 at 5530.868 kb on - strand, within PP_4864 at 5530.956 kb on + strand at 5530.956 kb on + strand at 5530.956 kb on + strand at 5530.956 kb on + strand at 5530.957 kb on - strand at 5530.982 kb on + strand at 5530.982 kb on + strand at 5530.983 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Alanine (C) remove 5,528,440 + PP_4862 0.55 -0.4 5,528,440 + PP_4862 0.55 +1.5 5,528,440 + PP_4862 0.55 +0.7 5,528,441 - PP_4862 0.55 +0.1 5,528,441 - PP_4862 0.55 +0.2 5,528,441 - PP_4862 0.55 +1.0 5,528,441 - PP_4862 0.55 +2.0 5,528,441 - PP_4862 0.55 +0.5 5,528,441 - PP_4862 0.55 +1.4 5,528,441 - PP_4862 0.55 -1.4 5,528,582 + PP_4862 0.73 +0.9 5,528,582 + PP_4862 0.73 -0.9 5,528,582 + PP_4862 0.73 +0.1 5,528,582 + PP_4862 0.73 +2.4 5,528,583 - PP_4862 0.73 +0.2 5,528,697 + PP_4862 0.88 -0.3 5,528,698 - PP_4862 0.88 +0.8 5,528,698 - PP_4862 0.88 +0.3 5,528,773 - -0.8 5,528,803 + +1.6 5,528,804 - -0.3 5,528,804 - -0.3 5,528,804 - +0.4 5,528,923 + +0.2 5,528,924 - -0.6 5,528,924 - +1.0 5,528,979 + -1.0 5,528,980 - +2.4 5,529,164 - -0.8 5,529,253 + +0.3 5,529,301 + +0.5 5,529,301 + +2.0 5,529,301 + -0.8 5,529,302 - +0.3 5,529,302 - +0.5 5,529,397 - -1.4 5,529,474 + PP_4863 0.13 -0.5 5,529,474 + PP_4863 0.13 -0.8 5,529,474 + PP_4863 0.13 -0.4 5,529,474 + PP_4863 0.13 -2.4 5,529,475 - PP_4863 0.13 -1.4 5,529,475 - PP_4863 0.13 -0.5 5,529,475 - PP_4863 0.13 -1.2 5,529,475 - PP_4863 0.13 -4.0 5,529,529 + PP_4863 0.21 -1.6 5,529,529 + PP_4863 0.21 -1.8 5,529,529 + PP_4863 0.21 -1.5 5,529,530 - PP_4863 0.21 +1.0 5,529,530 - PP_4863 0.21 -1.6 5,529,530 - PP_4863 0.21 -0.1 5,529,530 - PP_4863 0.21 -0.2 5,529,530 - PP_4863 0.21 -0.4 5,529,530 - PP_4863 0.21 -2.1 5,529,735 + PP_4863 0.50 -0.4 5,529,735 + PP_4863 0.50 +0.8 5,529,735 + +0.2 5,529,736 - PP_4863 0.50 +0.1 5,529,736 - PP_4863 0.50 -2.4 5,529,736 - PP_4863 0.50 -1.6 5,529,736 - PP_4863 0.50 +0.0 5,529,739 + PP_4863 0.50 -2.0 5,529,739 + PP_4863 0.50 -0.6 5,529,739 + PP_4863 0.50 -2.7 5,529,739 + PP_4863 0.50 -1.3 5,529,740 - PP_4863 0.50 -0.4 5,529,740 - PP_4863 0.50 -3.1 5,529,740 - PP_4863 0.50 -1.1 5,529,740 - PP_4863 0.50 -0.6 5,529,784 + PP_4863 0.56 -2.6 5,529,784 + PP_4863 0.56 -2.5 5,529,785 - PP_4863 0.56 -1.6 5,529,870 + PP_4863 0.68 +0.2 5,529,871 - PP_4863 0.68 -1.8 5,529,871 - PP_4863 0.68 +1.0 5,529,913 + PP_4863 0.74 -0.2 5,529,913 + PP_4863 0.74 -2.6 5,529,913 + PP_4863 0.74 -1.5 5,529,913 + PP_4863 0.74 -2.0 5,529,913 + PP_4863 0.74 -2.0 5,529,914 - PP_4863 0.74 -1.5 5,529,914 - PP_4863 0.74 -0.7 5,529,914 - PP_4863 0.74 -2.1 5,529,996 - PP_4863 0.86 -1.0 5,530,012 + PP_4863 0.88 -3.4 5,530,053 + -3.2 5,530,053 + -2.6 5,530,054 - -0.7 5,530,054 - -1.4 5,530,096 + -0.1 5,530,096 + -0.9 5,530,097 - -1.9 5,530,125 - -1.0 5,530,206 + PP_4864 0.13 -1.2 5,530,409 + PP_4864 0.36 -0.4 5,530,409 + PP_4864 0.36 -0.5 5,530,456 + PP_4864 0.41 -1.9 5,530,456 + PP_4864 0.41 -1.2 5,530,456 + PP_4864 0.41 -1.7 5,530,456 + PP_4864 0.41 -2.4 5,530,457 - PP_4864 0.42 -1.7 5,530,457 - PP_4864 0.42 +0.2 5,530,469 + PP_4864 0.43 -0.3 5,530,470 - PP_4864 0.43 -2.0 5,530,656 + PP_4864 0.64 -1.3 5,530,673 + PP_4864 0.66 -0.6 5,530,674 - PP_4864 0.66 -1.5 5,530,676 + PP_4864 0.67 -1.0 5,530,676 + PP_4864 0.67 -1.6 5,530,676 + PP_4864 0.67 -1.5 5,530,677 - PP_4864 0.67 -2.9 5,530,677 - PP_4864 0.67 -2.0 5,530,677 - PP_4864 0.67 -1.1 5,530,680 + PP_4864 0.67 -3.2 5,530,680 + PP_4864 0.67 -2.1 5,530,680 + PP_4864 0.67 -1.7 5,530,680 + PP_4864 0.67 -0.0 5,530,680 + PP_4864 0.67 -1.9 5,530,680 + PP_4864 0.67 -3.3 5,530,680 + PP_4864 0.67 -1.7 5,530,680 + PP_4864 0.67 -0.6 5,530,681 - PP_4864 0.67 +0.9 5,530,681 - PP_4864 0.67 -1.3 5,530,681 - PP_4864 0.67 -3.7 5,530,681 - PP_4864 0.67 -0.7 5,530,681 - PP_4864 0.67 -1.1 5,530,681 - PP_4864 0.67 -1.8 5,530,681 - PP_4864 0.67 -0.5 5,530,782 + PP_4864 0.79 -1.3 5,530,782 + PP_4864 0.79 -1.0 5,530,782 + PP_4864 0.79 -1.4 5,530,782 + PP_4864 0.79 -2.2 5,530,783 - PP_4864 0.79 -2.2 5,530,825 + PP_4864 0.84 -2.9 5,530,826 - PP_4864 0.84 -1.7 5,530,867 + PP_4864 0.88 -2.9 5,530,868 - PP_4864 0.88 -1.8 5,530,868 - PP_4864 0.88 +0.0 5,530,956 + -2.1 5,530,956 + -1.6 5,530,956 + -1.5 5,530,956 + -3.2 5,530,957 - -0.1 5,530,982 + -1.3 5,530,982 + -2.3 5,530,983 - -0.4
Or see this region's nucleotide sequence