Strain Fitness in Pseudomonas putida KT2440 around PP_2392

Experiment: L-Alanine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_2390 and PP_2392 are separated by 360 nucleotidesPP_2392 and PP_2393 are separated by 66 nucleotides PP_2390: PP_2390 - Transcriptional regulator, LysR family, at 2,728,273 to 2,729,193 _2390 PP_2392: PP_2392 - putative major facilitator family transporter, at 2,729,554 to 2,730,597 _2392 PP_2393: PP_2393 - DNA polymerase II, at 2,730,664 to 2,733,024 _2393 Position (kb) 2729 2730 2731Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2728.696 kb on + strand, within PP_2390at 2728.782 kb on - strand, within PP_2390at 2728.782 kb on - strand, within PP_2390at 2728.796 kb on - strand, within PP_2390at 2729.000 kb on + strand, within PP_2390at 2729.000 kb on + strand, within PP_2390at 2729.075 kb on - strand, within PP_2390at 2729.077 kb on + strand, within PP_2390at 2729.077 kb on + strand, within PP_2390at 2729.077 kb on + strand, within PP_2390at 2729.078 kb on - strand, within PP_2390at 2729.078 kb on - strand, within PP_2390at 2729.078 kb on - strand, within PP_2390at 2729.078 kb on - strand, within PP_2390at 2729.078 kb on - strand, within PP_2390at 2729.078 kb on - strand, within PP_2390at 2729.179 kb on + strandat 2729.179 kb on + strandat 2729.179 kb on + strandat 2729.179 kb on + strandat 2729.180 kb on - strandat 2729.180 kb on - strandat 2729.180 kb on - strandat 2729.223 kb on - strandat 2729.269 kb on - strandat 2729.363 kb on - strandat 2729.363 kb on - strandat 2729.436 kb on + strandat 2729.436 kb on + strandat 2729.437 kb on - strandat 2729.437 kb on - strandat 2729.437 kb on - strandat 2729.502 kb on + strandat 2729.503 kb on - strandat 2729.515 kb on + strandat 2729.515 kb on + strandat 2729.597 kb on - strandat 2729.597 kb on - strandat 2729.597 kb on - strandat 2729.612 kb on + strandat 2730.041 kb on + strand, within PP_2392at 2730.042 kb on - strand, within PP_2392at 2730.068 kb on + strand, within PP_2392at 2730.069 kb on - strand, within PP_2392at 2730.112 kb on + strandat 2730.112 kb on + strand, within PP_2392at 2730.113 kb on - strand, within PP_2392at 2730.118 kb on + strand, within PP_2392at 2730.118 kb on + strand, within PP_2392at 2730.118 kb on + strand, within PP_2392at 2730.118 kb on + strand, within PP_2392at 2730.119 kb on - strand, within PP_2392at 2730.119 kb on - strand, within PP_2392at 2730.319 kb on + strand, within PP_2392at 2730.320 kb on - strand, within PP_2392at 2730.349 kb on + strand, within PP_2392at 2730.349 kb on + strand, within PP_2392at 2730.350 kb on - strand, within PP_2392at 2730.350 kb on - strand, within PP_2392at 2730.518 kb on + strandat 2730.596 kb on - strandat 2730.596 kb on - strandat 2730.624 kb on + strandat 2730.629 kb on + strandat 2730.629 kb on + strandat 2730.630 kb on - strandat 2730.630 kb on - strandat 2730.639 kb on + strandat 2730.639 kb on + strandat 2730.639 kb on + strandat 2730.640 kb on - strandat 2730.640 kb on - strandat 2730.640 kb on - strandat 2730.910 kb on + strandat 2730.910 kb on + strand, within PP_2393at 2730.911 kb on - strand, within PP_2393at 2731.007 kb on - strand, within PP_2393at 2731.165 kb on + strand, within PP_2393at 2731.166 kb on - strand, within PP_2393at 2731.204 kb on + strand, within PP_2393at 2731.204 kb on + strand, within PP_2393at 2731.204 kb on + strand, within PP_2393at 2731.205 kb on - strand, within PP_2393at 2731.205 kb on - strand, within PP_2393at 2731.205 kb on - strand, within PP_2393at 2731.205 kb on - strand, within PP_2393

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Alanine (C)
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2,728,696 + PP_2390 0.46 +2.0
2,728,782 - PP_2390 0.55 +2.6
2,728,782 - PP_2390 0.55 +3.2
2,728,796 - PP_2390 0.57 +2.0
2,729,000 + PP_2390 0.79 +1.9
2,729,000 + PP_2390 0.79 +0.7
2,729,075 - PP_2390 0.87 +1.7
2,729,077 + PP_2390 0.87 +2.5
2,729,077 + PP_2390 0.87 +1.8
2,729,077 + PP_2390 0.87 +1.7
2,729,078 - PP_2390 0.87 +2.4
2,729,078 - PP_2390 0.87 +2.5
2,729,078 - PP_2390 0.87 +1.7
2,729,078 - PP_2390 0.87 +1.8
2,729,078 - PP_2390 0.87 +1.2
2,729,078 - PP_2390 0.87 +2.3
2,729,179 + +1.5
2,729,179 + +1.9
2,729,179 + +1.7
2,729,179 + +1.8
2,729,180 - +0.7
2,729,180 - +1.5
2,729,180 - +0.8
2,729,223 - -0.5
2,729,269 - -0.8
2,729,363 - +0.0
2,729,363 - -0.9
2,729,436 + +0.2
2,729,436 + -0.2
2,729,437 - +0.5
2,729,437 - -0.1
2,729,437 - +0.2
2,729,502 + +0.3
2,729,503 - -1.6
2,729,515 + +1.0
2,729,515 + -0.2
2,729,597 - -2.6
2,729,597 - +0.6
2,729,597 - -0.4
2,729,612 + -0.1
2,730,041 + PP_2392 0.47 -0.1
2,730,042 - PP_2392 0.47 -0.1
2,730,068 + PP_2392 0.49 -0.7
2,730,069 - PP_2392 0.49 -2.6
2,730,112 + -0.9
2,730,112 + PP_2392 0.53 +0.6
2,730,113 - PP_2392 0.54 +0.1
2,730,118 + PP_2392 0.54 -0.0
2,730,118 + PP_2392 0.54 +2.5
2,730,118 + PP_2392 0.54 -0.5
2,730,118 + PP_2392 0.54 +0.2
2,730,119 - PP_2392 0.54 -2.1
2,730,119 - PP_2392 0.54 -0.2
2,730,319 + PP_2392 0.73 +1.1
2,730,320 - PP_2392 0.73 -0.2
2,730,349 + PP_2392 0.76 +2.5
2,730,349 + PP_2392 0.76 +0.3
2,730,350 - PP_2392 0.76 -0.1
2,730,350 - PP_2392 0.76 +0.4
2,730,518 + -0.7
2,730,596 - +0.6
2,730,596 - -1.4
2,730,624 + +0.1
2,730,629 + -1.3
2,730,629 + -0.6
2,730,630 - +0.8
2,730,630 - +0.6
2,730,639 + +1.7
2,730,639 + +1.3
2,730,639 + -1.6
2,730,640 - -0.1
2,730,640 - +0.1
2,730,640 - +0.5
2,730,910 + +0.7
2,730,910 + PP_2393 0.10 +0.2
2,730,911 - PP_2393 0.10 +1.0
2,731,007 - PP_2393 0.15 +0.4
2,731,165 + PP_2393 0.21 +0.1
2,731,166 - PP_2393 0.21 -0.3
2,731,204 + PP_2393 0.23 +0.6
2,731,204 + PP_2393 0.23 -0.1
2,731,204 + PP_2393 0.23 -0.4
2,731,205 - PP_2393 0.23 +0.6
2,731,205 - PP_2393 0.23 -0.2
2,731,205 - PP_2393 0.23 -1.3
2,731,205 - PP_2393 0.23 -0.1

Or see this region's nucleotide sequence