Experiment: L-Alanine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_2390 and PP_2392 are separated by 360 nucleotides PP_2392 and PP_2393 are separated by 66 nucleotides
PP_2390: PP_2390 - Transcriptional regulator, LysR family, at 2,728,273 to 2,729,193
_2390
PP_2392: PP_2392 - putative major facilitator family transporter, at 2,729,554 to 2,730,597
_2392
PP_2393: PP_2393 - DNA polymerase II, at 2,730,664 to 2,733,024
_2393
Position (kb)
2729
2730
2731 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2728.696 kb on + strand, within PP_2390 at 2728.782 kb on - strand, within PP_2390 at 2728.782 kb on - strand, within PP_2390 at 2728.796 kb on - strand, within PP_2390 at 2729.000 kb on + strand, within PP_2390 at 2729.000 kb on + strand, within PP_2390 at 2729.075 kb on - strand, within PP_2390 at 2729.077 kb on + strand, within PP_2390 at 2729.077 kb on + strand, within PP_2390 at 2729.077 kb on + strand, within PP_2390 at 2729.078 kb on - strand, within PP_2390 at 2729.078 kb on - strand, within PP_2390 at 2729.078 kb on - strand, within PP_2390 at 2729.078 kb on - strand, within PP_2390 at 2729.078 kb on - strand, within PP_2390 at 2729.078 kb on - strand, within PP_2390 at 2729.179 kb on + strand at 2729.179 kb on + strand at 2729.179 kb on + strand at 2729.179 kb on + strand at 2729.180 kb on - strand at 2729.180 kb on - strand at 2729.180 kb on - strand at 2729.223 kb on - strand at 2729.269 kb on - strand at 2729.363 kb on - strand at 2729.363 kb on - strand at 2729.436 kb on + strand at 2729.436 kb on + strand at 2729.437 kb on - strand at 2729.437 kb on - strand at 2729.437 kb on - strand at 2729.502 kb on + strand at 2729.503 kb on - strand at 2729.515 kb on + strand at 2729.515 kb on + strand at 2729.597 kb on - strand at 2729.597 kb on - strand at 2729.597 kb on - strand at 2729.612 kb on + strand at 2730.041 kb on + strand, within PP_2392 at 2730.042 kb on - strand, within PP_2392 at 2730.068 kb on + strand, within PP_2392 at 2730.069 kb on - strand, within PP_2392 at 2730.112 kb on + strand at 2730.112 kb on + strand, within PP_2392 at 2730.113 kb on - strand, within PP_2392 at 2730.118 kb on + strand, within PP_2392 at 2730.118 kb on + strand, within PP_2392 at 2730.118 kb on + strand, within PP_2392 at 2730.118 kb on + strand, within PP_2392 at 2730.119 kb on - strand, within PP_2392 at 2730.119 kb on - strand, within PP_2392 at 2730.319 kb on + strand, within PP_2392 at 2730.320 kb on - strand, within PP_2392 at 2730.349 kb on + strand, within PP_2392 at 2730.349 kb on + strand, within PP_2392 at 2730.350 kb on - strand, within PP_2392 at 2730.350 kb on - strand, within PP_2392 at 2730.518 kb on + strand at 2730.596 kb on - strand at 2730.596 kb on - strand at 2730.624 kb on + strand at 2730.629 kb on + strand at 2730.629 kb on + strand at 2730.630 kb on - strand at 2730.630 kb on - strand at 2730.639 kb on + strand at 2730.639 kb on + strand at 2730.639 kb on + strand at 2730.640 kb on - strand at 2730.640 kb on - strand at 2730.640 kb on - strand at 2730.910 kb on + strand at 2730.910 kb on + strand, within PP_2393 at 2730.911 kb on - strand, within PP_2393 at 2731.007 kb on - strand, within PP_2393 at 2731.165 kb on + strand, within PP_2393 at 2731.166 kb on - strand, within PP_2393 at 2731.204 kb on + strand, within PP_2393 at 2731.204 kb on + strand, within PP_2393 at 2731.204 kb on + strand, within PP_2393 at 2731.205 kb on - strand, within PP_2393 at 2731.205 kb on - strand, within PP_2393 at 2731.205 kb on - strand, within PP_2393 at 2731.205 kb on - strand, within PP_2393
Per-strain Table
Position Strand Gene LocusTag Fraction L-Alanine (C) remove 2,728,696 + PP_2390 0.46 +2.0 2,728,782 - PP_2390 0.55 +2.6 2,728,782 - PP_2390 0.55 +3.2 2,728,796 - PP_2390 0.57 +2.0 2,729,000 + PP_2390 0.79 +1.9 2,729,000 + PP_2390 0.79 +0.7 2,729,075 - PP_2390 0.87 +1.7 2,729,077 + PP_2390 0.87 +2.5 2,729,077 + PP_2390 0.87 +1.8 2,729,077 + PP_2390 0.87 +1.7 2,729,078 - PP_2390 0.87 +2.4 2,729,078 - PP_2390 0.87 +2.5 2,729,078 - PP_2390 0.87 +1.7 2,729,078 - PP_2390 0.87 +1.8 2,729,078 - PP_2390 0.87 +1.2 2,729,078 - PP_2390 0.87 +2.3 2,729,179 + +1.5 2,729,179 + +1.9 2,729,179 + +1.7 2,729,179 + +1.8 2,729,180 - +0.7 2,729,180 - +1.5 2,729,180 - +0.8 2,729,223 - -0.5 2,729,269 - -0.8 2,729,363 - +0.0 2,729,363 - -0.9 2,729,436 + +0.2 2,729,436 + -0.2 2,729,437 - +0.5 2,729,437 - -0.1 2,729,437 - +0.2 2,729,502 + +0.3 2,729,503 - -1.6 2,729,515 + +1.0 2,729,515 + -0.2 2,729,597 - -2.6 2,729,597 - +0.6 2,729,597 - -0.4 2,729,612 + -0.1 2,730,041 + PP_2392 0.47 -0.1 2,730,042 - PP_2392 0.47 -0.1 2,730,068 + PP_2392 0.49 -0.7 2,730,069 - PP_2392 0.49 -2.6 2,730,112 + -0.9 2,730,112 + PP_2392 0.53 +0.6 2,730,113 - PP_2392 0.54 +0.1 2,730,118 + PP_2392 0.54 -0.0 2,730,118 + PP_2392 0.54 +2.5 2,730,118 + PP_2392 0.54 -0.5 2,730,118 + PP_2392 0.54 +0.2 2,730,119 - PP_2392 0.54 -2.1 2,730,119 - PP_2392 0.54 -0.2 2,730,319 + PP_2392 0.73 +1.1 2,730,320 - PP_2392 0.73 -0.2 2,730,349 + PP_2392 0.76 +2.5 2,730,349 + PP_2392 0.76 +0.3 2,730,350 - PP_2392 0.76 -0.1 2,730,350 - PP_2392 0.76 +0.4 2,730,518 + -0.7 2,730,596 - +0.6 2,730,596 - -1.4 2,730,624 + +0.1 2,730,629 + -1.3 2,730,629 + -0.6 2,730,630 - +0.8 2,730,630 - +0.6 2,730,639 + +1.7 2,730,639 + +1.3 2,730,639 + -1.6 2,730,640 - -0.1 2,730,640 - +0.1 2,730,640 - +0.5 2,730,910 + +0.7 2,730,910 + PP_2393 0.10 +0.2 2,730,911 - PP_2393 0.10 +1.0 2,731,007 - PP_2393 0.15 +0.4 2,731,165 + PP_2393 0.21 +0.1 2,731,166 - PP_2393 0.21 -0.3 2,731,204 + PP_2393 0.23 +0.6 2,731,204 + PP_2393 0.23 -0.1 2,731,204 + PP_2393 0.23 -0.4 2,731,205 - PP_2393 0.23 +0.6 2,731,205 - PP_2393 0.23 -0.2 2,731,205 - PP_2393 0.23 -1.3 2,731,205 - PP_2393 0.23 -0.1
Or see this region's nucleotide sequence