Strain Fitness in Pseudomonas putida KT2440 around PP_0495

Experiment: L-Alanine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0494 and PP_t75 are separated by 6 nucleotidesPP_t75 and PP_0495 are separated by 106 nucleotidesPP_0495 and PP_0496 are separated by 72 nucleotides PP_0494: PP_0494 - selenocysteyl-tRNA-specific translation elongation factor, at 582,135 to 584,057 _0494 PP_t75: PP_t75 - tRNA-Sec, at 584,064 to 584,159 _t75 PP_0495: PP_0495 - type 1 L-asparaginase, at 584,266 to 585,255 _0495 PP_0496: PP_0496 - Sodium/alanine symporter, at 585,328 to 586,770 _0496 Position (kb) 584 585 586Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 583.645 kb on + strand, within PP_0494at 583.777 kb on + strand, within PP_0494at 583.897 kb on + strandat 583.897 kb on + strandat 583.898 kb on - strandat 583.922 kb on + strandat 583.922 kb on + strandat 583.922 kb on + strandat 584.203 kb on - strandat 584.203 kb on - strandat 584.339 kb on - strandat 584.426 kb on + strand, within PP_0495at 584.426 kb on + strand, within PP_0495at 584.427 kb on - strand, within PP_0495at 584.427 kb on - strand, within PP_0495at 584.427 kb on - strand, within PP_0495at 584.427 kb on - strand, within PP_0495at 584.467 kb on - strand, within PP_0495at 584.552 kb on + strand, within PP_0495at 584.586 kb on - strand, within PP_0495at 584.587 kb on + strand, within PP_0495at 584.626 kb on + strand, within PP_0495at 584.670 kb on - strand, within PP_0495at 584.670 kb on - strand, within PP_0495at 584.756 kb on - strand, within PP_0495at 584.798 kb on + strand, within PP_0495at 584.798 kb on + strand, within PP_0495at 584.798 kb on + strand, within PP_0495at 584.799 kb on - strand, within PP_0495at 584.911 kb on + strand, within PP_0495at 584.912 kb on - strand, within PP_0495at 584.912 kb on - strand, within PP_0495at 584.912 kb on - strand, within PP_0495at 584.961 kb on - strand, within PP_0495at 585.066 kb on + strand, within PP_0495at 585.067 kb on - strand, within PP_0495at 585.067 kb on - strand, within PP_0495at 585.224 kb on + strandat 585.224 kb on + strandat 585.224 kb on + strandat 585.245 kb on - strandat 585.455 kb on - strandat 585.455 kb on - strandat 585.479 kb on + strand, within PP_0496at 585.479 kb on + strand, within PP_0496at 585.692 kb on + strand, within PP_0496at 585.692 kb on + strand, within PP_0496at 585.692 kb on + strand, within PP_0496at 585.692 kb on + strand, within PP_0496at 585.693 kb on - strand, within PP_0496at 585.695 kb on + strand, within PP_0496at 585.695 kb on + strand, within PP_0496at 585.696 kb on - strand, within PP_0496at 585.696 kb on - strand, within PP_0496at 585.696 kb on - strand, within PP_0496at 585.696 kb on - strand, within PP_0496at 585.701 kb on + strand, within PP_0496at 585.701 kb on + strand, within PP_0496at 585.702 kb on - strand, within PP_0496at 585.702 kb on - strand, within PP_0496at 585.827 kb on + strand, within PP_0496at 585.827 kb on + strand, within PP_0496at 585.828 kb on - strand, within PP_0496at 586.118 kb on + strand, within PP_0496at 586.119 kb on - strand, within PP_0496

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Alanine (C)
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583,645 + PP_0494 0.79 +0.5
583,777 + PP_0494 0.85 -1.1
583,897 + +0.7
583,897 + -0.4
583,898 - -0.1
583,922 + -0.3
583,922 + +0.3
583,922 + +0.9
584,203 - +0.7
584,203 - +0.3
584,339 - +4.6
584,426 + PP_0495 0.16 +3.1
584,426 + PP_0495 0.16 +3.2
584,427 - PP_0495 0.16 +4.7
584,427 - PP_0495 0.16 +3.6
584,427 - PP_0495 0.16 +4.1
584,427 - PP_0495 0.16 +4.4
584,467 - PP_0495 0.20 +3.5
584,552 + PP_0495 0.29 +2.8
584,586 - PP_0495 0.32 +4.4
584,587 + PP_0495 0.32 +3.0
584,626 + PP_0495 0.36 +3.5
584,670 - PP_0495 0.41 +3.8
584,670 - PP_0495 0.41 +3.9
584,756 - PP_0495 0.49 +3.7
584,798 + PP_0495 0.54 +2.8
584,798 + PP_0495 0.54 +3.3
584,798 + PP_0495 0.54 +1.8
584,799 - PP_0495 0.54 +4.7
584,911 + PP_0495 0.65 +2.2
584,912 - PP_0495 0.65 +3.4
584,912 - PP_0495 0.65 +2.8
584,912 - PP_0495 0.65 +4.0
584,961 - PP_0495 0.70 +3.0
585,066 + PP_0495 0.81 +2.2
585,067 - PP_0495 0.81 +4.0
585,067 - PP_0495 0.81 +4.5
585,224 + +2.2
585,224 + +2.3
585,224 + +2.6
585,245 - +3.9
585,455 - +1.0
585,455 - -0.4
585,479 + PP_0496 0.10 -1.2
585,479 + PP_0496 0.10 -0.2
585,692 + PP_0496 0.25 +0.4
585,692 + PP_0496 0.25 -0.3
585,692 + PP_0496 0.25 +0.3
585,692 + PP_0496 0.25 -2.7
585,693 - PP_0496 0.25 -0.7
585,695 + PP_0496 0.25 +1.4
585,695 + PP_0496 0.25 -0.8
585,696 - PP_0496 0.26 -1.2
585,696 - PP_0496 0.26 -1.7
585,696 - PP_0496 0.26 +1.0
585,696 - PP_0496 0.26 +2.1
585,701 + PP_0496 0.26 +0.7
585,701 + PP_0496 0.26 -0.2
585,702 - PP_0496 0.26 +0.0
585,702 - PP_0496 0.26 -0.4
585,827 + PP_0496 0.35 -0.0
585,827 + PP_0496 0.35 -0.2
585,828 - PP_0496 0.35 +0.3
586,118 + PP_0496 0.55 -0.4
586,119 - PP_0496 0.55 +0.3

Or see this region's nucleotide sequence