Strain Fitness in Pseudomonas putida KT2440 around PP_5SC

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_23SC and PP_5SC are separated by 119 nucleotidesPP_5SC and PP_0437 are separated by 183 nucleotides PP_23SC: PP_23SC - 23S ribosomal RNA, at 526,763 to 529,664 _23SC PP_5SC: PP_5SC - 5S ribosomal RNA, at 529,784 to 529,903 _5SC PP_0437: PP_0437 - bifunctional biotin-[acetyl-CoA-carboxylase] ligase/biotin operon repressor BirA, at 530,087 to 531,046 _0437 Position (kb) 529 530Strain fitness (log2 ratio) -1 0 1at 529.920 kb on + strandat 529.936 kb on + strandat 530.030 kb on + strandat 530.053 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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529,920 + -0.3
529,936 + +0.2
530,030 + +0.3
530,053 + -0.1

Or see this region's nucleotide sequence