Strain Fitness in Pseudomonas putida KT2440 around PP_5SA

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_23SA and PP_5SA are separated by 132 nucleotidesPP_5SA and PP_16SB are separated by 462 nucleotides PP_23SA: PP_23SA - 23S ribosomal RNA, at 173,203 to 176,104 _23SA PP_5SA: PP_5SA - 5S ribosomal RNA, at 176,237 to 176,356 _5SA PP_16SB: PP_16SB - 16S ribosomal RNA, at 176,819 to 178,340 _16SB Position (kb) 176 177Strain fitness (log2 ratio) -1 0 1at 176.408 kb on + strandat 176.431 kb on + strandat 176.432 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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176,408 + -1.5
176,431 + +0.4
176,432 - -0.7

Or see this region's nucleotide sequence