Strain Fitness in Pseudomonas putida KT2440 around PP_5458

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0799 and PP_5458 are separated by 205 nucleotidesPP_5458 and PP_0800 are separated by 190 nucleotidesPP_0800 and PP_0801 overlap by 22 nucleotides PP_0799: PP_0799 - histidine-specific outer membrane porin D, at 917,765 to 919,099 _0799 PP_5458: PP_5458 - conserved exported protein of unknown function, at 919,305 to 919,529 _5458 PP_0800: PP_0800 - conserved protein of unknown function, at 919,720 to 920,472 _0800 PP_0801: PP_0801 - conserved exported protein of unknown function, at 920,451 to 920,762 _0801 Position (kb) 919 920Strain fitness (log2 ratio) -2 -1 0 1 2at 918.309 kb on + strand, within PP_0799at 918.310 kb on - strand, within PP_0799at 918.310 kb on - strand, within PP_0799at 918.310 kb on - strand, within PP_0799at 918.310 kb on - strand, within PP_0799at 918.354 kb on + strand, within PP_0799at 918.354 kb on + strand, within PP_0799at 918.354 kb on + strand, within PP_0799at 918.354 kb on + strand, within PP_0799at 918.354 kb on + strand, within PP_0799at 918.354 kb on + strand, within PP_0799at 918.354 kb on + strandat 918.354 kb on + strand, within PP_0799at 918.354 kb on + strandat 918.355 kb on - strand, within PP_0799at 918.355 kb on - strand, within PP_0799at 918.355 kb on - strand, within PP_0799at 918.355 kb on - strand, within PP_0799at 918.355 kb on - strand, within PP_0799at 918.355 kb on - strand, within PP_0799at 918.355 kb on - strand, within PP_0799at 918.355 kb on - strand, within PP_0799at 918.355 kb on - strand, within PP_0799at 918.355 kb on - strand, within PP_0799at 918.355 kb on - strand, within PP_0799at 918.355 kb on - strand, within PP_0799at 918.360 kb on + strand, within PP_0799at 918.360 kb on + strand, within PP_0799at 918.360 kb on + strand, within PP_0799at 918.361 kb on - strand, within PP_0799at 918.375 kb on + strand, within PP_0799at 918.375 kb on + strand, within PP_0799at 918.375 kb on + strand, within PP_0799at 918.376 kb on - strand, within PP_0799at 918.378 kb on + strand, within PP_0799at 918.378 kb on + strand, within PP_0799at 918.502 kb on - strand, within PP_0799at 918.502 kb on - strand, within PP_0799at 918.504 kb on + strand, within PP_0799at 918.505 kb on - strand, within PP_0799at 918.505 kb on - strand, within PP_0799at 918.505 kb on - strand, within PP_0799at 918.505 kb on - strand, within PP_0799at 918.537 kb on + strand, within PP_0799at 918.537 kb on + strand, within PP_0799at 918.538 kb on - strand, within PP_0799at 918.605 kb on + strand, within PP_0799at 918.605 kb on + strand, within PP_0799at 918.605 kb on + strand, within PP_0799at 918.606 kb on - strand, within PP_0799at 918.606 kb on - strand, within PP_0799at 918.606 kb on - strand, within PP_0799at 918.879 kb on + strand, within PP_0799at 918.964 kb on - strand, within PP_0799at 918.970 kb on + strandat 919.106 kb on + strandat 919.106 kb on + strandat 919.106 kb on + strandat 919.106 kb on + strandat 919.107 kb on - strandat 919.163 kb on + strandat 919.175 kb on - strandat 919.238 kb on + strandat 919.238 kb on + strandat 919.244 kb on - strandat 919.290 kb on - strandat 919.518 kb on - strandat 919.518 kb on - strandat 919.537 kb on + strandat 919.559 kb on + strandat 919.559 kb on + strandat 919.559 kb on + strandat 919.575 kb on - strandat 919.581 kb on - strandat 919.581 kb on - strandat 919.688 kb on - strandat 919.739 kb on + strandat 919.739 kb on + strandat 919.739 kb on + strandat 919.740 kb on - strandat 919.846 kb on + strand, within PP_0800at 919.846 kb on + strand, within PP_0800at 919.847 kb on - strand, within PP_0800at 919.889 kb on + strand, within PP_0800at 919.890 kb on - strand, within PP_0800at 919.890 kb on - strand, within PP_0800at 920.156 kb on + strand, within PP_0800at 920.156 kb on + strand, within PP_0800at 920.156 kb on + strand, within PP_0800at 920.156 kb on + strand, within PP_0800at 920.156 kb on + strand, within PP_0800at 920.156 kb on + strand, within PP_0800at 920.157 kb on - strand, within PP_0800at 920.157 kb on - strand, within PP_0800at 920.157 kb on - strand, within PP_0800at 920.157 kb on - strand, within PP_0800at 920.335 kb on + strand, within PP_0800at 920.335 kb on + strand, within PP_0800at 920.407 kb on - strandat 920.428 kb on - strandat 920.440 kb on + strandat 920.440 kb on + strandat 920.440 kb on + strandat 920.440 kb on + strandat 920.441 kb on - strandat 920.441 kb on - strandat 920.507 kb on - strand, within PP_0801

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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918,309 + PP_0799 0.41 +0.7
918,310 - PP_0799 0.41 -1.3
918,310 - PP_0799 0.41 -0.7
918,310 - PP_0799 0.41 +1.2
918,310 - PP_0799 0.41 -0.4
918,354 + PP_0799 0.44 -0.2
918,354 + PP_0799 0.44 -0.1
918,354 + PP_0799 0.44 +0.2
918,354 + PP_0799 0.44 -0.2
918,354 + PP_0799 0.44 +0.4
918,354 + PP_0799 0.44 +0.4
918,354 + +1.7
918,354 + PP_0799 0.44 +0.3
918,354 + -0.4
918,355 - PP_0799 0.44 -0.5
918,355 - PP_0799 0.44 -0.5
918,355 - PP_0799 0.44 -0.6
918,355 - PP_0799 0.44 -0.3
918,355 - PP_0799 0.44 -0.3
918,355 - PP_0799 0.44 -0.0
918,355 - PP_0799 0.44 +0.2
918,355 - PP_0799 0.44 +0.1
918,355 - PP_0799 0.44 +0.2
918,355 - PP_0799 0.44 +0.6
918,355 - PP_0799 0.44 +0.4
918,355 - PP_0799 0.44 +0.8
918,360 + PP_0799 0.45 +0.9
918,360 + PP_0799 0.45 +0.9
918,360 + PP_0799 0.45 -0.9
918,361 - PP_0799 0.45 +0.9
918,375 + PP_0799 0.46 -1.2
918,375 + PP_0799 0.46 +1.2
918,375 + PP_0799 0.46 -0.4
918,376 - PP_0799 0.46 +0.3
918,378 + PP_0799 0.46 -1.3
918,378 + PP_0799 0.46 -1.0
918,502 - PP_0799 0.55 +0.3
918,502 - PP_0799 0.55 +0.0
918,504 + PP_0799 0.55 -0.2
918,505 - PP_0799 0.55 +1.1
918,505 - PP_0799 0.55 -0.2
918,505 - PP_0799 0.55 +0.2
918,505 - PP_0799 0.55 -1.1
918,537 + PP_0799 0.58 -0.6
918,537 + PP_0799 0.58 -0.6
918,538 - PP_0799 0.58 -0.5
918,605 + PP_0799 0.63 +0.1
918,605 + PP_0799 0.63 +0.0
918,605 + PP_0799 0.63 +0.0
918,606 - PP_0799 0.63 -0.1
918,606 - PP_0799 0.63 +1.7
918,606 - PP_0799 0.63 -0.5
918,879 + PP_0799 0.83 +0.0
918,964 - PP_0799 0.90 +0.2
918,970 + -0.2
919,106 + +0.7
919,106 + -0.1
919,106 + -0.1
919,106 + +0.8
919,107 - +1.0
919,163 + +2.7
919,175 - +0.1
919,238 + -0.0
919,238 + -0.5
919,244 - -0.0
919,290 - +0.8
919,518 - -0.1
919,518 - -0.2
919,537 + -0.4
919,559 + -0.4
919,559 + -0.9
919,559 + +0.3
919,575 - +0.3
919,581 - +0.2
919,581 - +0.6
919,688 - +0.5
919,739 + +1.0
919,739 + +0.0
919,739 + +0.2
919,740 - -0.9
919,846 + PP_0800 0.17 +0.3
919,846 + PP_0800 0.17 -0.3
919,847 - PP_0800 0.17 +0.9
919,889 + PP_0800 0.22 +1.6
919,890 - PP_0800 0.23 -0.4
919,890 - PP_0800 0.23 -2.1
920,156 + PP_0800 0.58 +1.2
920,156 + PP_0800 0.58 -0.1
920,156 + PP_0800 0.58 -0.3
920,156 + PP_0800 0.58 -0.0
920,156 + PP_0800 0.58 -1.3
920,156 + PP_0800 0.58 -0.8
920,157 - PP_0800 0.58 +0.1
920,157 - PP_0800 0.58 -0.0
920,157 - PP_0800 0.58 +2.0
920,157 - PP_0800 0.58 +0.2
920,335 + PP_0800 0.82 +0.0
920,335 + PP_0800 0.82 +0.8
920,407 - -0.3
920,428 - -0.2
920,440 + +0.2
920,440 + +0.5
920,440 + +0.4
920,440 + -0.0
920,441 - +0.5
920,441 - -1.5
920,507 - PP_0801 0.18 -0.6

Or see this region's nucleotide sequence