Experiment: D-Glucose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_5233 and PP_5234 are separated by 46 nucleotides PP_5234 and PP_5723 are separated by 134 nucleotides PP_5723 and PP_5235 are separated by 24 nucleotides PP_5235 and PP_5724 are separated by 0 nucleotides
PP_5233: PP_5233 - ammonium transporter AmtB, at 5,966,361 to 5,967,692
_5233
PP_5234: PP_5234 - activator of NRII(GlnL/NtrB) phosphatase, at 5,967,739 to 5,968,077
_5234
PP_5723: PP_5723 - protein of unknown function, at 5,968,212 to 5,968,571
_5723
PP_5235: PP_5235 - conserved protein of unknown function, at 5,968,596 to 5,968,862
_5235
PP_5724: PP_5724 - conserved protein of unknown function, at 5,968,863 to 5,969,216
_5724
Position (kb) 5967
5968
5969 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5966.900 kb on + strand, within PP_5233 at 5967.033 kb on + strand, within PP_5233 at 5967.033 kb on + strand, within PP_5233 at 5967.034 kb on - strand, within PP_5233 at 5967.034 kb on - strand, within PP_5233 at 5967.034 kb on - strand at 5967.163 kb on + strand, within PP_5233 at 5967.163 kb on + strand, within PP_5233 at 5967.163 kb on + strand, within PP_5233 at 5967.163 kb on + strand, within PP_5233 at 5967.164 kb on - strand, within PP_5233 at 5967.164 kb on - strand, within PP_5233 at 5967.164 kb on - strand, within PP_5233 at 5967.192 kb on + strand, within PP_5233 at 5967.192 kb on + strand, within PP_5233 at 5967.192 kb on + strand, within PP_5233 at 5967.192 kb on + strand, within PP_5233 at 5967.192 kb on + strand, within PP_5233 at 5967.433 kb on + strand, within PP_5233 at 5967.523 kb on + strand, within PP_5233 at 5967.523 kb on + strand, within PP_5233 at 5967.524 kb on - strand, within PP_5233 at 5967.524 kb on - strand, within PP_5233 at 5967.545 kb on + strand, within PP_5233 at 5967.546 kb on - strand, within PP_5233 at 5967.602 kb on + strand at 5967.603 kb on - strand at 5967.645 kb on + strand at 5967.645 kb on + strand at 5967.657 kb on + strand at 5967.658 kb on - strand at 5967.666 kb on + strand at 5967.667 kb on - strand at 5967.667 kb on - strand at 5967.740 kb on + strand at 5967.740 kb on + strand at 5967.740 kb on + strand at 5967.740 kb on + strand at 5967.740 kb on + strand at 5967.741 kb on - strand at 5967.741 kb on - strand at 5967.741 kb on - strand at 5968.135 kb on - strand at 5968.228 kb on - strand at 5968.283 kb on + strand, within PP_5723 at 5968.283 kb on + strand, within PP_5723 at 5968.284 kb on - strand at 5968.284 kb on - strand, within PP_5723 at 5968.470 kb on + strand, within PP_5723 at 5968.471 kb on - strand, within PP_5723 at 5968.471 kb on - strand, within PP_5723 at 5968.557 kb on + strand at 5968.557 kb on + strand at 5968.772 kb on - strand, within PP_5235 at 5968.881 kb on + strand at 5968.889 kb on - strand at 5968.889 kb on - strand at 5968.902 kb on + strand, within PP_5724 at 5968.902 kb on + strand, within PP_5724 at 5968.903 kb on - strand, within PP_5724 at 5968.973 kb on + strand, within PP_5724 at 5968.974 kb on - strand, within PP_5724 at 5968.974 kb on - strand, within PP_5724 at 5968.974 kb on - strand, within PP_5724
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose (C) remove 5,966,900 + PP_5233 0.40 +1.0 5,967,033 + PP_5233 0.50 +0.0 5,967,033 + PP_5233 0.50 +0.2 5,967,034 - PP_5233 0.51 +1.0 5,967,034 - PP_5233 0.51 -2.1 5,967,034 - -0.2 5,967,163 + PP_5233 0.60 +0.2 5,967,163 + PP_5233 0.60 -0.1 5,967,163 + PP_5233 0.60 +0.8 5,967,163 + PP_5233 0.60 +0.1 5,967,164 - PP_5233 0.60 +0.2 5,967,164 - PP_5233 0.60 +0.3 5,967,164 - PP_5233 0.60 +0.7 5,967,192 + PP_5233 0.62 -0.5 5,967,192 + PP_5233 0.62 +0.3 5,967,192 + PP_5233 0.62 +0.1 5,967,192 + PP_5233 0.62 -0.9 5,967,192 + PP_5233 0.62 -0.3 5,967,433 + PP_5233 0.80 -0.6 5,967,523 + PP_5233 0.87 -0.8 5,967,523 + PP_5233 0.87 +0.2 5,967,524 - PP_5233 0.87 +0.0 5,967,524 - PP_5233 0.87 -0.4 5,967,545 + PP_5233 0.89 -2.2 5,967,546 - PP_5233 0.89 -0.4 5,967,602 + -0.8 5,967,603 - +0.0 5,967,645 + +0.8 5,967,645 + -0.1 5,967,657 + +0.5 5,967,658 - +0.6 5,967,666 + +0.4 5,967,667 - -0.3 5,967,667 - -0.6 5,967,740 + +0.5 5,967,740 + -0.2 5,967,740 + -0.2 5,967,740 + +1.8 5,967,740 + +0.2 5,967,741 - +0.3 5,967,741 - -0.1 5,967,741 - +0.4 5,968,135 - +0.7 5,968,228 - -1.2 5,968,283 + PP_5723 0.20 -0.3 5,968,283 + PP_5723 0.20 +0.4 5,968,284 - +1.8 5,968,284 - PP_5723 0.20 -0.4 5,968,470 + PP_5723 0.72 -0.3 5,968,471 - PP_5723 0.72 +1.0 5,968,471 - PP_5723 0.72 +0.0 5,968,557 + -0.2 5,968,557 + -0.1 5,968,772 - PP_5235 0.66 +1.4 5,968,881 + +0.5 5,968,889 - -0.4 5,968,889 - -0.9 5,968,902 + PP_5724 0.11 -0.5 5,968,902 + PP_5724 0.11 -0.1 5,968,903 - PP_5724 0.11 +0.7 5,968,973 + PP_5724 0.31 +0.2 5,968,974 - PP_5724 0.31 -0.1 5,968,974 - PP_5724 0.31 +0.8 5,968,974 - PP_5724 0.31 +0.1
Or see this region's nucleotide sequence