Strain Fitness in Pseudomonas putida KT2440 around PP_5123

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_5122 and PP_5123 are separated by 112 nucleotidesPP_5123 and PP_5124 are separated by 101 nucleotidesPP_5124 and PP_5125 are separated by 90 nucleotides PP_5122: PP_5122 - Oxidoreductase, GMC family, at 5,843,379 to 5,844,977 _5122 PP_5123: PP_5123 - Phosphopantetheine adenylyltransferase, at 5,845,090 to 5,845,575 _5123 PP_5124: PP_5124 - putative 4Fe-4S cluster-containing protein, at 5,845,677 to 5,845,928 _5124 PP_5125: PP_5125 - Formamidopyrimidine-DNA glycosylase, at 5,846,019 to 5,846,831 _5125 Position (kb) 5845 5846Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 5844.124 kb on + strand, within PP_5122at 5844.124 kb on + strand, within PP_5122at 5844.124 kb on + strand, within PP_5122at 5844.125 kb on - strand, within PP_5122at 5844.125 kb on - strand, within PP_5122at 5844.165 kb on + strand, within PP_5122at 5844.166 kb on - strand, within PP_5122at 5844.166 kb on - strand, within PP_5122at 5844.166 kb on - strand, within PP_5122at 5844.186 kb on - strand, within PP_5122at 5844.309 kb on + strand, within PP_5122at 5844.309 kb on + strand, within PP_5122at 5844.309 kb on + strand, within PP_5122at 5844.310 kb on - strand, within PP_5122at 5844.310 kb on - strand, within PP_5122at 5844.310 kb on - strand, within PP_5122at 5844.312 kb on + strand, within PP_5122at 5844.312 kb on + strand, within PP_5122at 5844.312 kb on + strand, within PP_5122at 5844.313 kb on - strand, within PP_5122at 5844.313 kb on - strand, within PP_5122at 5844.313 kb on - strand, within PP_5122at 5844.313 kb on - strand, within PP_5122at 5844.313 kb on - strand, within PP_5122at 5844.313 kb on - strand, within PP_5122at 5844.382 kb on - strand, within PP_5122at 5844.479 kb on + strand, within PP_5122at 5844.479 kb on + strand, within PP_5122at 5844.502 kb on + strand, within PP_5122at 5844.502 kb on + strand, within PP_5122at 5844.619 kb on - strand, within PP_5122at 5844.664 kb on + strand, within PP_5122at 5844.678 kb on - strand, within PP_5122at 5844.678 kb on - strand, within PP_5122at 5844.918 kb on + strandat 5844.919 kb on - strandat 5844.919 kb on - strandat 5844.919 kb on - strandat 5844.919 kb on - strandat 5844.919 kb on - strandat 5844.919 kb on - strandat 5844.998 kb on + strandat 5844.999 kb on - strandat 5844.999 kb on - strandat 5844.999 kb on - strandat 5845.001 kb on - strandat 5845.001 kb on - strandat 5845.001 kb on - strandat 5845.903 kb on - strandat 5845.986 kb on - strandat 5845.986 kb on - strandat 5846.041 kb on + strandat 5846.042 kb on - strandat 5846.091 kb on + strandat 5846.091 kb on + strandat 5846.092 kb on - strandat 5846.143 kb on + strand, within PP_5125at 5846.245 kb on + strand, within PP_5125at 5846.317 kb on + strand, within PP_5125at 5846.318 kb on - strand, within PP_5125at 5846.454 kb on + strand, within PP_5125at 5846.455 kb on - strand, within PP_5125at 5846.455 kb on - strand, within PP_5125at 5846.455 kb on - strand, within PP_5125at 5846.516 kb on - strand, within PP_5125

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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5,844,124 + PP_5122 0.47 -1.4
5,844,124 + PP_5122 0.47 -1.0
5,844,124 + PP_5122 0.47 -1.5
5,844,125 - PP_5122 0.47 -0.4
5,844,125 - PP_5122 0.47 -0.2
5,844,165 + PP_5122 0.49 -0.0
5,844,166 - PP_5122 0.49 +0.6
5,844,166 - PP_5122 0.49 +0.4
5,844,166 - PP_5122 0.49 +0.0
5,844,186 - PP_5122 0.50 +0.5
5,844,309 + PP_5122 0.58 +0.2
5,844,309 + PP_5122 0.58 +0.2
5,844,309 + PP_5122 0.58 -0.4
5,844,310 - PP_5122 0.58 -0.0
5,844,310 - PP_5122 0.58 +0.4
5,844,310 - PP_5122 0.58 -0.7
5,844,312 + PP_5122 0.58 +0.7
5,844,312 + PP_5122 0.58 +0.4
5,844,312 + PP_5122 0.58 -0.2
5,844,313 - PP_5122 0.58 -0.3
5,844,313 - PP_5122 0.58 -0.2
5,844,313 - PP_5122 0.58 +0.4
5,844,313 - PP_5122 0.58 +0.0
5,844,313 - PP_5122 0.58 +0.3
5,844,313 - PP_5122 0.58 +0.2
5,844,382 - PP_5122 0.63 +1.0
5,844,479 + PP_5122 0.69 +0.0
5,844,479 + PP_5122 0.69 +0.8
5,844,502 + PP_5122 0.70 +0.4
5,844,502 + PP_5122 0.70 +0.2
5,844,619 - PP_5122 0.78 +0.4
5,844,664 + PP_5122 0.80 +0.3
5,844,678 - PP_5122 0.81 +0.5
5,844,678 - PP_5122 0.81 +0.2
5,844,918 + +0.8
5,844,919 - -2.0
5,844,919 - +0.2
5,844,919 - +4.1
5,844,919 - -0.4
5,844,919 - +0.5
5,844,919 - +0.2
5,844,998 + -0.0
5,844,999 - +0.3
5,844,999 - +0.4
5,844,999 - -1.1
5,845,001 - -0.1
5,845,001 - +0.5
5,845,001 - -0.2
5,845,903 - -1.4
5,845,986 - +0.1
5,845,986 - +0.2
5,846,041 + -0.4
5,846,042 - -0.6
5,846,091 + +0.1
5,846,091 + +0.4
5,846,092 - -1.1
5,846,143 + PP_5125 0.15 -0.6
5,846,245 + PP_5125 0.28 +0.4
5,846,317 + PP_5125 0.37 +0.2
5,846,318 - PP_5125 0.37 -0.1
5,846,454 + PP_5125 0.54 +0.0
5,846,455 - PP_5125 0.54 +1.0
5,846,455 - PP_5125 0.54 +0.6
5,846,455 - PP_5125 0.54 +1.2
5,846,516 - PP_5125 0.61 +0.9

Or see this region's nucleotide sequence