Strain Fitness in Pseudomonas putida KT2440 around PP_5012

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_5010 and PP_5011 are separated by 64 nucleotidesPP_5011 and PP_5012 overlap by 1 nucleotidesPP_5012 and PP_5013 overlap by 4 nucleotides PP_5010: PP_5010 - conserved protein of unknown function, at 5,710,762 to 5,711,097 _5010 PP_5011: PP_5011 - Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE, at 5,711,162 to 5,711,932 _5011 PP_5012: PP_5012 - conserved protein of unknown function, at 5,711,932 to 5,712,555 _5012 PP_5013: PP_5013 - 2-octaprenylphenol hydroxylase, at 5,712,552 to 5,714,174 _5013 Position (kb) 5711 5712 5713Strain fitness (log2 ratio) -1 0 1at 5710.943 kb on + strand, within PP_5010at 5711.064 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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5,710,943 + PP_5010 0.54 +1.2
5,711,064 - +0.3

Or see this region's nucleotide sequence