Experiment: D-Glucose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_4985 and PP_4986 are separated by 0 nucleotides PP_4986 and PP_4987 are separated by 203 nucleotides PP_4987 and PP_4988 overlap by 8 nucleotides
PP_4985: PP_4985 - 16S rRNA m3U1498 methyltransferase, at 5,679,945 to 5,680,664
_4985
PP_4986: PP_4986 - Channel protein, hemolysin III family, at 5,680,665 to 5,681,282
_4986
PP_4987: PP_4987 - putative Chemotaxis protein, at 5,681,486 to 5,681,959
_4987
PP_4988: PP_4988 - signal transduction histidine kinase CheA/CheY-like receiver, at 5,681,952 to 5,686,892
_4988
Position (kb) 5681
5682 Strain fitness (log2 ratio) -1
0
1 at 5680.532 kb on + strand, within PP_4985 at 5680.533 kb on - strand, within PP_4985 at 5680.666 kb on + strand at 5680.667 kb on - strand at 5680.675 kb on + strand at 5680.789 kb on + strand, within PP_4986 at 5680.790 kb on - strand, within PP_4986 at 5680.888 kb on + strand, within PP_4986 at 5680.888 kb on + strand, within PP_4986 at 5680.888 kb on + strand, within PP_4986 at 5680.889 kb on - strand, within PP_4986 at 5680.889 kb on - strand, within PP_4986 at 5681.026 kb on + strand, within PP_4986 at 5681.027 kb on - strand, within PP_4986 at 5681.027 kb on - strand, within PP_4986 at 5681.048 kb on - strand, within PP_4986 at 5681.048 kb on - strand, within PP_4986 at 5681.125 kb on + strand, within PP_4986 at 5681.125 kb on + strand, within PP_4986 at 5681.125 kb on + strand, within PP_4986 at 5681.125 kb on + strand, within PP_4986 at 5681.149 kb on + strand, within PP_4986 at 5681.223 kb on - strand at 5681.275 kb on + strand at 5681.276 kb on - strand at 5681.278 kb on + strand at 5681.278 kb on + strand at 5681.278 kb on + strand at 5681.278 kb on + strand at 5681.279 kb on - strand at 5681.279 kb on - strand at 5681.488 kb on - strand at 5681.617 kb on - strand, within PP_4987 at 5681.846 kb on - strand, within PP_4987 at 5681.846 kb on - strand, within PP_4987 at 5682.007 kb on + strand at 5682.007 kb on + strand at 5682.219 kb on + strand at 5682.219 kb on + strand at 5682.219 kb on + strand at 5682.220 kb on - strand at 5682.220 kb on - strand at 5682.220 kb on - strand at 5682.220 kb on - strand at 5682.285 kb on + strand at 5682.360 kb on - strand at 5682.466 kb on - strand, within PP_4988 at 5682.646 kb on + strand, within PP_4988 at 5682.658 kb on + strand, within PP_4988 at 5682.659 kb on - strand, within PP_4988 at 5682.673 kb on + strand, within PP_4988 at 5682.674 kb on - strand, within PP_4988 at 5682.674 kb on - strand, within PP_4988 at 5682.674 kb on - strand, within PP_4988 at 5682.679 kb on + strand, within PP_4988 at 5682.680 kb on - strand, within PP_4988 at 5682.700 kb on + strand, within PP_4988 at 5682.766 kb on + strand, within PP_4988 at 5682.766 kb on + strand, within PP_4988
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose (C) remove 5,680,532 + PP_4985 0.82 -1.2 5,680,533 - PP_4985 0.82 +0.5 5,680,666 + +0.4 5,680,667 - -0.2 5,680,675 + +0.7 5,680,789 + PP_4986 0.20 -0.5 5,680,790 - PP_4986 0.20 +0.9 5,680,888 + PP_4986 0.36 +0.2 5,680,888 + PP_4986 0.36 -0.4 5,680,888 + PP_4986 0.36 -0.7 5,680,889 - PP_4986 0.36 -0.7 5,680,889 - PP_4986 0.36 +0.7 5,681,026 + PP_4986 0.58 +0.1 5,681,027 - PP_4986 0.59 +0.1 5,681,027 - PP_4986 0.59 +0.6 5,681,048 - PP_4986 0.62 +0.2 5,681,048 - PP_4986 0.62 +0.4 5,681,125 + PP_4986 0.74 -1.0 5,681,125 + PP_4986 0.74 -0.1 5,681,125 + PP_4986 0.74 -0.4 5,681,125 + PP_4986 0.74 -0.4 5,681,149 + PP_4986 0.78 +0.8 5,681,223 - -0.6 5,681,275 + +0.4 5,681,276 - +0.5 5,681,278 + -0.5 5,681,278 + +0.8 5,681,278 + -0.2 5,681,278 + -0.0 5,681,279 - +0.2 5,681,279 - +1.3 5,681,488 - -0.9 5,681,617 - PP_4987 0.28 +0.2 5,681,846 - PP_4987 0.76 +0.6 5,681,846 - PP_4987 0.76 +0.6 5,682,007 + +0.3 5,682,007 + +0.2 5,682,219 + +1.0 5,682,219 + +0.6 5,682,219 + -1.2 5,682,220 - -0.0 5,682,220 - +0.1 5,682,220 - +0.4 5,682,220 - -0.9 5,682,285 + +0.7 5,682,360 - +0.0 5,682,466 - PP_4988 0.10 +0.0 5,682,646 + PP_4988 0.14 -1.2 5,682,658 + PP_4988 0.14 -1.5 5,682,659 - PP_4988 0.14 +0.0 5,682,673 + PP_4988 0.15 +0.0 5,682,674 - PP_4988 0.15 -0.9 5,682,674 - PP_4988 0.15 +0.1 5,682,674 - PP_4988 0.15 -0.2 5,682,679 + PP_4988 0.15 +0.4 5,682,680 - PP_4988 0.15 -0.4 5,682,700 + PP_4988 0.15 -0.7 5,682,766 + PP_4988 0.16 -0.1 5,682,766 + PP_4988 0.16 +0.7
Or see this region's nucleotide sequence