Experiment: D-Glucose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_4968 and PP_4969 are separated by 132 nucleotides PP_4969 and PP_4970 are separated by 74 nucleotides PP_4970 and PP_4971 are separated by 83 nucleotides
PP_4968: PP_4968 - DNA ligase B, at 5,660,376 to 5,662,076
_4968
PP_4969: PP_4969 - conserved exported protein of unknown function, at 5,662,209 to 5,662,601
_4969
PP_4970: PP_4970 - putative Cytochrome c', at 5,662,676 to 5,663,143
_4970
PP_4971: PP_4971 - putative Outer membrane-bound lytic murein transglycolase A, at 5,663,227 to 5,664,405
_4971
Position (kb) 5662
5663
5664 Strain fitness (log2 ratio) -1
0
1 at 5661.715 kb on + strand, within PP_4968 at 5661.716 kb on - strand, within PP_4968 at 5662.036 kb on + strand at 5662.036 kb on + strand at 5662.037 kb on - strand at 5662.037 kb on - strand at 5662.089 kb on + strand at 5662.090 kb on - strand at 5662.090 kb on - strand at 5662.090 kb on - strand at 5662.142 kb on - strand at 5662.142 kb on - strand at 5662.195 kb on + strand at 5663.128 kb on + strand at 5663.129 kb on - strand at 5663.129 kb on - strand at 5663.151 kb on + strand at 5663.151 kb on + strand at 5663.205 kb on + strand at 5663.205 kb on + strand at 5663.205 kb on + strand at 5663.362 kb on + strand, within PP_4971 at 5663.362 kb on + strand, within PP_4971 at 5663.362 kb on + strand, within PP_4971 at 5663.363 kb on - strand, within PP_4971 at 5663.363 kb on - strand, within PP_4971 at 5663.363 kb on - strand, within PP_4971 at 5663.363 kb on - strand, within PP_4971 at 5663.425 kb on + strand, within PP_4971 at 5663.426 kb on - strand, within PP_4971 at 5663.426 kb on - strand, within PP_4971 at 5663.426 kb on - strand, within PP_4971 at 5663.426 kb on - strand, within PP_4971 at 5663.426 kb on - strand, within PP_4971 at 5663.555 kb on - strand, within PP_4971 at 5663.555 kb on - strand, within PP_4971 at 5663.555 kb on - strand, within PP_4971 at 5663.555 kb on - strand, within PP_4971 at 5663.605 kb on + strand, within PP_4971 at 5663.605 kb on + strand, within PP_4971 at 5663.605 kb on + strand, within PP_4971 at 5663.606 kb on - strand, within PP_4971 at 5663.606 kb on - strand, within PP_4971 at 5663.606 kb on - strand, within PP_4971 at 5663.606 kb on - strand, within PP_4971 at 5663.606 kb on - strand, within PP_4971 at 5663.617 kb on + strand, within PP_4971 at 5663.707 kb on + strand, within PP_4971 at 5664.039 kb on - strand, within PP_4971 at 5664.067 kb on + strand, within PP_4971 at 5664.067 kb on + strand, within PP_4971 at 5664.067 kb on + strand, within PP_4971 at 5664.068 kb on - strand, within PP_4971 at 5664.068 kb on - strand, within PP_4971 at 5664.068 kb on - strand, within PP_4971 at 5664.068 kb on - strand, within PP_4971 at 5664.072 kb on - strand, within PP_4971 at 5664.125 kb on + strand, within PP_4971 at 5664.125 kb on + strand, within PP_4971 at 5664.126 kb on - strand, within PP_4971
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose (C) remove 5,661,715 + PP_4968 0.79 +0.7 5,661,716 - PP_4968 0.79 +0.4 5,662,036 + +0.9 5,662,036 + -0.1 5,662,037 - +0.2 5,662,037 - -0.1 5,662,089 + -1.0 5,662,090 - -0.3 5,662,090 - -0.4 5,662,090 - +0.3 5,662,142 - +0.7 5,662,142 - +0.7 5,662,195 + +0.6 5,663,128 + -0.6 5,663,129 - -0.4 5,663,129 - +0.4 5,663,151 + +0.6 5,663,151 + -0.3 5,663,205 + +0.2 5,663,205 + -0.4 5,663,205 + -0.4 5,663,362 + PP_4971 0.11 +0.4 5,663,362 + PP_4971 0.11 +0.3 5,663,362 + PP_4971 0.11 -0.2 5,663,363 - PP_4971 0.12 +0.1 5,663,363 - PP_4971 0.12 -0.0 5,663,363 - PP_4971 0.12 +0.3 5,663,363 - PP_4971 0.12 +0.5 5,663,425 + PP_4971 0.17 -0.0 5,663,426 - PP_4971 0.17 +0.1 5,663,426 - PP_4971 0.17 +0.3 5,663,426 - PP_4971 0.17 +0.1 5,663,426 - PP_4971 0.17 +0.4 5,663,426 - PP_4971 0.17 +1.3 5,663,555 - PP_4971 0.28 -0.9 5,663,555 - PP_4971 0.28 +0.2 5,663,555 - PP_4971 0.28 -0.2 5,663,555 - PP_4971 0.28 +0.2 5,663,605 + PP_4971 0.32 +1.0 5,663,605 + PP_4971 0.32 -1.5 5,663,605 + PP_4971 0.32 -0.3 5,663,606 - PP_4971 0.32 +0.7 5,663,606 - PP_4971 0.32 +0.7 5,663,606 - PP_4971 0.32 +0.3 5,663,606 - PP_4971 0.32 +0.0 5,663,606 - PP_4971 0.32 +0.6 5,663,617 + PP_4971 0.33 +0.0 5,663,707 + PP_4971 0.41 +1.2 5,664,039 - PP_4971 0.69 +1.1 5,664,067 + PP_4971 0.71 +0.6 5,664,067 + PP_4971 0.71 -0.1 5,664,067 + PP_4971 0.71 +0.1 5,664,068 - PP_4971 0.71 +0.2 5,664,068 - PP_4971 0.71 -0.7 5,664,068 - PP_4971 0.71 +0.7 5,664,068 - PP_4971 0.71 +0.7 5,664,072 - PP_4971 0.72 -0.6 5,664,125 + PP_4971 0.76 +1.0 5,664,125 + PP_4971 0.76 -0.2 5,664,126 - PP_4971 0.76 +0.4
Or see this region's nucleotide sequence