Strain Fitness in Pseudomonas putida KT2440 around PP_4877

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_4875 and PP_4876 are separated by 33 nucleotidesPP_4876 and PP_4877 are separated by 28 nucleotidesPP_4877 and PP_4879 are separated by 876 nucleotides PP_4875: PP_4875 - conserved membrane protein of unknown function, at 5,543,279 to 5,544,142 _4875 PP_4876: PP_4876 - 30S ribosomal protein S18, at 5,544,176 to 5,544,406 _4876 PP_4877: PP_4877 - 30S ribosomal protein S6, at 5,544,435 to 5,544,860 _4877 PP_4879: PP_4879 - 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB, at 5,545,737 to 5,546,483 _4879 Position (kb) 5544 5545Strain fitness (log2 ratio) -1 0 1at 5543.628 kb on + strand, within PP_4875at 5543.647 kb on - strand, within PP_4875at 5545.044 kb on - strandat 5545.047 kb on + strandat 5545.047 kb on + strandat 5545.047 kb on + strandat 5545.048 kb on - strandat 5545.048 kb on - strandat 5545.048 kb on - strandat 5545.048 kb on - strandat 5545.671 kb on + strandat 5545.695 kb on - strandat 5545.802 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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5,543,628 + PP_4875 0.40 +0.4
5,543,647 - PP_4875 0.43 +0.1
5,545,044 - +0.6
5,545,047 + -0.6
5,545,047 + -0.8
5,545,047 + +1.7
5,545,048 - +0.3
5,545,048 - +0.4
5,545,048 - +1.1
5,545,048 - +0.3
5,545,671 + -0.5
5,545,695 - -0.2
5,545,802 + +0.2

Or see this region's nucleotide sequence