Strain Fitness in Pseudomonas putida KT2440 around PP_4745

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_4745 and PP_4746 are separated by 18 nucleotides PP_4745: PP_4745 - transposase, at 5,401,792 to 5,403,324 _4745 PP_4746: PP_4746 - transposase, at 5,403,343 to 5,403,702 _4746 Position (kb) 5401 5402 5403 5404Strain fitness (log2 ratio) -1 0 1at 5400.810 kb on + strandat 5400.810 kb on + strandat 5400.863 kb on + strandat 5400.864 kb on - strandat 5400.864 kb on - strandat 5400.870 kb on + strandat 5400.871 kb on - strandat 5400.898 kb on + strandat 5400.904 kb on - strandat 5400.904 kb on - strandat 5401.033 kb on - strandat 5401.058 kb on - strandat 5401.083 kb on + strandat 5401.132 kb on + strandat 5401.133 kb on - strandat 5401.157 kb on - strandat 5401.210 kb on + strandat 5401.211 kb on - strandat 5401.211 kb on - strandat 5401.211 kb on - strandat 5401.283 kb on + strandat 5401.283 kb on + strandat 5401.284 kb on - strandat 5401.313 kb on + strandat 5401.314 kb on - strandat 5401.314 kb on - strandat 5401.357 kb on + strandat 5401.358 kb on - strandat 5401.358 kb on - strandat 5401.392 kb on + strandat 5401.392 kb on + strandat 5401.392 kb on + strandat 5401.393 kb on - strandat 5401.402 kb on + strandat 5401.403 kb on - strandat 5401.429 kb on - strandat 5401.429 kb on - strandat 5401.509 kb on + strandat 5401.510 kb on - strandat 5401.510 kb on - strandat 5401.510 kb on - strandat 5401.512 kb on + strandat 5401.652 kb on + strandat 5401.652 kb on + strandat 5401.668 kb on + strandat 5401.668 kb on + strandat 5401.668 kb on + strandat 5401.737 kb on - strandat 5401.737 kb on - strandat 5401.771 kb on - strandat 5403.878 kb on + strandat 5403.879 kb on - strandat 5403.881 kb on + strandat 5404.144 kb on + strandat 5404.145 kb on - strandat 5404.178 kb on + strandat 5404.178 kb on + strandat 5404.179 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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5,400,810 + -0.3
5,400,810 + -1.2
5,400,863 + -0.2
5,400,864 - -0.2
5,400,864 - -0.1
5,400,870 + -1.4
5,400,871 - +0.5
5,400,898 + +0.2
5,400,904 - -0.5
5,400,904 - +0.1
5,401,033 - +0.1
5,401,058 - +0.6
5,401,083 + -0.1
5,401,132 + +0.7
5,401,133 - +0.5
5,401,157 - +0.3
5,401,210 + -0.9
5,401,211 - +0.8
5,401,211 - -0.3
5,401,211 - +1.2
5,401,283 + -0.2
5,401,283 + +0.1
5,401,284 - +0.3
5,401,313 + +0.7
5,401,314 - +0.3
5,401,314 - +0.3
5,401,357 + -0.3
5,401,358 - -0.6
5,401,358 - -0.6
5,401,392 + +0.9
5,401,392 + +0.2
5,401,392 + -0.0
5,401,393 - -0.6
5,401,402 + +0.0
5,401,403 - +0.3
5,401,429 - -0.4
5,401,429 - +0.3
5,401,509 + +0.3
5,401,510 - -1.5
5,401,510 - -0.1
5,401,510 - +0.3
5,401,512 + -0.8
5,401,652 + +0.7
5,401,652 + +0.5
5,401,668 + -0.1
5,401,668 + +0.6
5,401,668 + -0.0
5,401,737 - +0.1
5,401,737 - +0.7
5,401,771 - +0.5
5,403,878 + -1.4
5,403,879 - -0.1
5,403,881 + +0.1
5,404,144 + -0.4
5,404,145 - +0.3
5,404,178 + -0.1
5,404,178 + -0.1
5,404,179 - -1.2

Or see this region's nucleotide sequence