Strain Fitness in Pseudomonas putida KT2440 around PP_4717

Experiment: D-Glucose (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPP_4716 and PP_4717 are separated by 16 nucleotidesPP_4717 and PP_4718 are separated by 8 nucleotides PP_4716: PP_4716 - Phosphoglucosamine mutase, at 5,362,425 to 5,363,765 _4716 PP_4717: PP_4717 - dihydropteroate synthase, at 5,363,782 to 5,364,633 _4717 PP_4718: PP_4718 - integral membrane ATP-dependent zinc metallopeptidase, at 5,364,642 to 5,366,555 _4718 Position (kb) 5363 5364 5365Strain fitness (log2 ratio) -1 0 1at 5363.766 kb on - strandat 5363.784 kb on - strandat 5364.571 kb on - strandat 5364.634 kb on - strandat 5364.634 kb on - strandat 5364.634 kb on - strandat 5364.644 kb on - strandat 5364.644 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
remove
5,363,766 - +0.1
5,363,784 - -0.2
5,364,571 - +0.7
5,364,634 - -0.1
5,364,634 - -0.1
5,364,634 - -0.6
5,364,644 - -0.7
5,364,644 - -0.4

Or see this region's nucleotide sequence