Experiment: D-Glucose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_5706 and PP_4715 are separated by 4 nucleotides PP_4715 and PP_4716 are separated by 65 nucleotides PP_4716 and PP_4717 are separated by 16 nucleotides PP_4717 and PP_4718 are separated by 8 nucleotides
PP_5706: PP_5706 - Sec translocation complex - SecG subunit, at 5,361,201 to 5,361,599
_5706
PP_4715: PP_4715 - triose phosphate isomerase, at 5,361,604 to 5,362,359
_4715
PP_4716: PP_4716 - Phosphoglucosamine mutase, at 5,362,425 to 5,363,765
_4716
PP_4717: PP_4717 - dihydropteroate synthase, at 5,363,782 to 5,364,633
_4717
PP_4718: PP_4718 - integral membrane ATP-dependent zinc metallopeptidase, at 5,364,642 to 5,366,555
_4718
Position (kb)
5362
5363
5364 Strain fitness (log2 ratio)
-2
-1
0
1 at 5361.426 kb on - strand, within PP_5706 at 5361.442 kb on - strand, within PP_5706 at 5361.522 kb on - strand, within PP_5706 at 5361.547 kb on - strand, within PP_5706 at 5363.766 kb on - strand at 5363.784 kb on - strand at 5364.571 kb on - strand at 5364.634 kb on - strand at 5364.634 kb on - strand at 5364.634 kb on - strand at 5364.644 kb on - strand at 5364.644 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose (C) remove 5,361,426 - PP_5706 0.56 +0.1 5,361,442 - PP_5706 0.60 -0.6 5,361,522 - PP_5706 0.80 -2.2 5,361,547 - PP_5706 0.87 +1.7 5,363,766 - +0.1 5,363,784 - -0.2 5,364,571 - +0.7 5,364,634 - -0.1 5,364,634 - -0.1 5,364,634 - -0.6 5,364,644 - -0.7 5,364,644 - -0.4
Or see this region's nucleotide sequence