Experiment: D-Glucose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_4322 and PP_4323 overlap by 4 nucleotides PP_4323 and PP_4324 overlap by 4 nucleotides PP_4324 and PP_4325 overlap by 4 nucleotides PP_4325 and PP_4326 are separated by 46 nucleotides
PP_4322: PP_4322 - holocytochrome c synthetase, at 4,912,710 to 4,914,698
_4322
PP_4323: PP_4323 - Cytochrome c-type biogenesis protein CcmE, at 4,914,695 to 4,915,150
_4323
PP_4324: PP_4324 - Heme exporter protein D, at 4,915,147 to 4,915,323
_4324
PP_4325: PP_4325 - protoheme IX reservoir complex subunit, at 4,915,320 to 4,916,087
_4325
PP_4326: PP_4326 - protoheme IX ABC transporter - permease subunit, at 4,916,134 to 4,916,802
_4326
Position (kb) 4915
4916 Strain fitness (log2 ratio) -1
0
1
2 at 4914.152 kb on - strand, within PP_4322 at 4915.038 kb on + strand, within PP_4323 at 4915.354 kb on - strand at 4915.354 kb on - strand at 4915.652 kb on + strand, within PP_4325 at 4916.080 kb on - strand at 4916.094 kb on - strand at 4916.094 kb on - strand at 4916.105 kb on - strand at 4916.295 kb on - strand, within PP_4326 at 4916.295 kb on - strand, within PP_4326
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose (C) remove 4,914,152 - PP_4322 0.72 +2.6 4,915,038 + PP_4323 0.75 -0.4 4,915,354 - +0.2 4,915,354 - +0.2 4,915,652 + PP_4325 0.43 +0.1 4,916,080 - -1.7 4,916,094 - +0.2 4,916,094 - +0.3 4,916,105 - +0.7 4,916,295 - PP_4326 0.24 -1.2 4,916,295 - PP_4326 0.24 -0.5
Or see this region's nucleotide sequence