Experiment: D-Glucose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_5748 and PP_4321 overlap by 4 nucleotides PP_4321 and PP_4322 overlap by 4 nucleotides PP_4322 and PP_4323 overlap by 4 nucleotides PP_4323 and PP_4324 overlap by 4 nucleotides PP_4324 and PP_4325 overlap by 4 nucleotides
PP_4320: PP_4320 - cytochrome c-type biogenesis protein, at 4,910,515 to 4,911,711
_4320
PP_5748: PP_5748 - cytochrome c heme lyase subunit, at 4,911,704 to 4,912,180
_5748
PP_4321: PP_4321 - holocytochrome c synthetase subunit, at 4,912,177 to 4,912,713
_4321
PP_4322: PP_4322 - holocytochrome c synthetase, at 4,912,710 to 4,914,698
_4322
PP_4323: PP_4323 - Cytochrome c-type biogenesis protein CcmE, at 4,914,695 to 4,915,150
_4323
PP_4324: PP_4324 - Heme exporter protein D, at 4,915,147 to 4,915,323
_4324
PP_4325: PP_4325 - protoheme IX reservoir complex subunit, at 4,915,320 to 4,916,087
_4325
Position (kb) 4912
4913
4914
4915 Strain fitness (log2 ratio) -1
0
1
2 at 4912.108 kb on - strand, within PP_5748 at 4912.108 kb on - strand, within PP_5748 at 4912.314 kb on - strand at 4912.854 kb on - strand at 4912.858 kb on - strand at 4914.152 kb on - strand, within PP_4322 at 4915.038 kb on + strand, within PP_4323 at 4915.039 kb on - strand, within PP_4323 at 4915.354 kb on - strand at 4915.354 kb on - strand at 4915.652 kb on + strand, within PP_4325
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose (C) remove 4,912,108 - PP_5748 0.85 +0.9 4,912,108 - PP_5748 0.85 +0.1 4,912,314 - -0.5 4,912,854 - -1.4 4,912,858 - +0.6 4,914,152 - PP_4322 0.72 +2.6 4,915,038 + PP_4323 0.75 -0.4 4,915,039 - PP_4323 0.75 +2.2 4,915,354 - +0.2 4,915,354 - +0.2 4,915,652 + PP_4325 0.43 +0.1
Or see this region's nucleotide sequence