Strain Fitness in Pseudomonas putida KT2440 around PP_3500

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_3498 and PP_3499 are separated by 314 nucleotidesPP_3499 and PP_3500 overlap by 4 nucleotidesPP_3500 and PP_3501 are separated by 63 nucleotides PP_3498: PP_3498 - transposase, at 3,967,873 to 3,969,051 _3498 PP_3499: PP_3499 - transposase, at 3,969,366 to 3,969,686 _3499 PP_3500: PP_3500 - transposase, at 3,969,683 to 3,970,018 _3500 PP_3501: PP_3501 - transposase, at 3,970,082 to 3,971,617 _3501 Position (kb) 3969 3970 3971Strain fitness (log2 ratio) -1 0 1at 3969.231 kb on + strandat 3969.240 kb on + strandat 3969.244 kb on + strandat 3969.244 kb on + strandat 3969.244 kb on + strandat 3969.262 kb on + strandat 3969.262 kb on + strandat 3969.262 kb on + strandat 3969.262 kb on + strandat 3969.262 kb on + strandat 3969.268 kb on - strandat 3969.268 kb on - strandat 3969.268 kb on - strandat 3969.268 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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3,969,231 + +0.2
3,969,240 + -0.3
3,969,244 + -0.6
3,969,244 + +0.5
3,969,244 + +0.6
3,969,262 + +1.0
3,969,262 + +0.3
3,969,262 + +0.1
3,969,262 + -0.2
3,969,262 + +0.2
3,969,268 - -0.1
3,969,268 - -0.2
3,969,268 - +0.0
3,969,268 - -0.5

Or see this region's nucleotide sequence