Strain Fitness in Pseudomonas putida KT2440 around PP_2469

Experiment: D-Glucose (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPP_2466 and PP_2467 are separated by 45 nucleotidesPP_2467 and PP_2468 are separated by 27 nucleotidesPP_2468 and PP_2469 are separated by 109 nucleotidesPP_2469 and PP_2470 are separated by 31 nucleotides PP_2466: PP_2466 - Translation initiation factor IF-3, at 2,811,534 to 2,812,067 _2466 PP_2467: PP_2467 - 50S ribosomal subunit protein L35, at 2,812,113 to 2,812,322 _2467 PP_2468: PP_2468 - 50S ribosomal protein L20, at 2,812,350 to 2,812,706 _2468 PP_2469: PP_2469 - Phenylalanine--tRNA ligase alpha subunit, at 2,812,816 to 2,813,832 _2469 PP_2470: PP_2470 - Phenylalanine--tRNA ligase beta subunit, at 2,813,864 to 2,816,245 _2470 Position (kb) 2812 2813 2814Strain fitness (log2 ratio) -1 0 1at 2812.095 kb on + strandat 2812.095 kb on + strandat 2812.095 kb on + strandat 2812.095 kb on + strandat 2812.095 kb on + strandat 2812.095 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
remove
2,812,095 + -0.4
2,812,095 + -0.2
2,812,095 + -0.2
2,812,095 + +0.2
2,812,095 + -0.3
2,812,095 + -0.3

Or see this region's nucleotide sequence