Strain Fitness in Pseudomonas putida KT2440 around PP_1771

Experiment: D-Glucose (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPP_1770 and PP_1771 overlap by 4 nucleotidesPP_1771 and PP_1772 are separated by 70 nucleotides PP_1770: PP_1770 - 3-phosphoshikimate 1-carboxyvinyltransferase, at 1,976,337 to 1,978,577 _1770 PP_1771: PP_1771 - Cytidylate kinase, at 1,978,574 to 1,979,260 _1771 PP_1772: PP_1772 - 30S ribosomal protein S1, at 1,979,331 to 1,981,061 _1772 Position (kb) 1978 1979 1980Strain fitness (log2 ratio) -1 0 1at 1979.254 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
remove
1,979,254 + +0.1

Or see this region's nucleotide sequence