Strain Fitness in Pseudomonas putida KT2440 around PP_1432

Experiment: D-Glucose (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPP_1431 and PP_1432 are separated by 5 nucleotidesPP_1432 and PP_1433 are separated by 163 nucleotidesPP_1433 and PP_1434 overlap by 14 nucleotides PP_1431: PP_1431 - Elongation factor 4, at 1,631,247 to 1,633,046 _1431 PP_1432: PP_1432 - signal peptidase I, at 1,633,052 to 1,633,906 _1432 PP_1433: PP_1433 - Ribonuclease 3, at 1,634,070 to 1,634,759 _1433 PP_1434: PP_1434 - GTPase Era, at 1,634,746 to 1,635,654 _1434 Position (kb) 1633 1634Strain fitness (log2 ratio) -1 0 1at 1632.231 kb on + strand, within PP_1431at 1632.773 kb on + strand, within PP_1431at 1633.040 kb on + strandat 1633.040 kb on + strandat 1633.040 kb on + strandat 1633.044 kb on + strandat 1633.954 kb on + strandat 1633.954 kb on + strandat 1634.760 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
remove
1,632,231 + PP_1431 0.55 +0.3
1,632,773 + PP_1431 0.85 +0.5
1,633,040 + -0.2
1,633,040 + +0.3
1,633,040 + +0.7
1,633,044 + +0.4
1,633,954 + +0.2
1,633,954 + +0.6
1,634,760 + +1.0

Or see this region's nucleotide sequence