Strain Fitness in Pseudomonas putida KT2440 around PP_0955

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0953 and PP_0954 are separated by 0 nucleotidesPP_0954 and PP_0955 overlap by 14 nucleotidesPP_0955 and PP_0956 are separated by 8 nucleotidesPP_0956 and PP_0957 are separated by 12 nucleotides PP_0953: PP_0953 - lipopolysaccharide ABC transporter, subunit LptB, at 1,096,236 to 1,096,961 _0953 PP_0954: PP_0954 - conserved exported protein of unknown function, at 1,096,962 to 1,097,486 _0954 PP_0955: PP_0955 - conserved exported protein of unknown function, at 1,097,473 to 1,098,045 _0955 PP_0956: PP_0956 - 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, at 1,098,054 to 1,098,578 _0956 PP_0957: PP_0957 - D-arabinose 5-phosphate isomerase, at 1,098,591 to 1,099,565 _0957 Position (kb) 1097 1098 1099Strain fitness (log2 ratio) -1 0 1 2at 1097.607 kb on - strand, within PP_0955at 1098.694 kb on - strand, within PP_0957at 1098.786 kb on - strand, within PP_0957

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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1,097,607 - PP_0955 0.23 +2.0
1,098,694 - PP_0957 0.11 -0.3
1,098,786 - PP_0957 0.20 -1.2

Or see this region's nucleotide sequence