Experiment: D-Glucose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0952 and PP_0953 are separated by 175 nucleotides PP_0953 and PP_0954 are separated by 0 nucleotides PP_0954 and PP_0955 overlap by 14 nucleotides PP_0955 and PP_0956 are separated by 8 nucleotides
PP_0952: PP_0952 - RNA polymerase sigma-54 factor, at 1,094,567 to 1,096,060
_0952
PP_0953: PP_0953 - lipopolysaccharide ABC transporter, subunit LptB, at 1,096,236 to 1,096,961
_0953
PP_0954: PP_0954 - conserved exported protein of unknown function, at 1,096,962 to 1,097,486
_0954
PP_0955: PP_0955 - conserved exported protein of unknown function, at 1,097,473 to 1,098,045
_0955
PP_0956: PP_0956 - 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, at 1,098,054 to 1,098,578
_0956
Position (kb)
1096
1097
1098 Strain fitness (log2 ratio)
-1
0
1
2 at 1096.072 kb on - strand at 1096.072 kb on - strand at 1096.072 kb on - strand at 1096.075 kb on - strand at 1096.075 kb on - strand at 1096.075 kb on - strand at 1096.075 kb on - strand at 1096.169 kb on + strand at 1096.174 kb on + strand at 1096.179 kb on + strand at 1096.217 kb on - strand at 1096.217 kb on - strand at 1097.607 kb on - strand, within PP_0955
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose (C) remove 1,096,072 - +0.6 1,096,072 - +0.5 1,096,072 - +0.7 1,096,075 - +0.2 1,096,075 - +0.5 1,096,075 - -0.9 1,096,075 - +0.6 1,096,169 + -0.6 1,096,174 + +1.6 1,096,179 + +0.1 1,096,217 - +0.5 1,096,217 - -0.3 1,097,607 - PP_0955 0.23 +2.0
Or see this region's nucleotide sequence