Strain Fitness in Pseudomonas putida KT2440 around PP_0953

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0952 and PP_0953 are separated by 175 nucleotidesPP_0953 and PP_0954 are separated by 0 nucleotidesPP_0954 and PP_0955 overlap by 14 nucleotides PP_0952: PP_0952 - RNA polymerase sigma-54 factor, at 1,094,567 to 1,096,060 _0952 PP_0953: PP_0953 - lipopolysaccharide ABC transporter, subunit LptB, at 1,096,236 to 1,096,961 _0953 PP_0954: PP_0954 - conserved exported protein of unknown function, at 1,096,962 to 1,097,486 _0954 PP_0955: PP_0955 - conserved exported protein of unknown function, at 1,097,473 to 1,098,045 _0955 Position (kb) 1096 1097Strain fitness (log2 ratio) -1 0 1 2at 1096.072 kb on - strandat 1096.072 kb on - strandat 1096.072 kb on - strandat 1096.075 kb on - strandat 1096.075 kb on - strandat 1096.075 kb on - strandat 1096.075 kb on - strandat 1096.169 kb on + strandat 1096.174 kb on + strandat 1096.179 kb on + strandat 1096.217 kb on - strandat 1096.217 kb on - strandat 1097.607 kb on - strand, within PP_0955

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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1,096,072 - +0.6
1,096,072 - +0.5
1,096,072 - +0.7
1,096,075 - +0.2
1,096,075 - +0.5
1,096,075 - -0.9
1,096,075 - +0.6
1,096,169 + -0.6
1,096,174 + +1.6
1,096,179 + +0.1
1,096,217 - +0.5
1,096,217 - -0.3
1,097,607 - PP_0955 0.23 +2.0

Or see this region's nucleotide sequence