Strain Fitness in Pseudomonas putida KT2440 around PP_0853

Experiment: D-Glucose (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPP_0852 and PP_0853 are separated by 3 nucleotidesPP_0853 and PP_0854 are separated by 25 nucleotides PP_0852: PP_0852 - Transcriptional regulator, Cro/CI family, at 986,003 to 987,010 _0852 PP_0853: PP_0853 - 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, at 987,014 to 988,123 _0853 PP_0854: PP_0854 - Histidine--tRNA ligase, at 988,149 to 989,438 _0854 Position (kb) 987 988 989Strain fitness (log2 ratio) -1 0 1at 986.025 kb on + strandat 986.025 kb on + strandat 986.110 kb on + strand, within PP_0852at 986.110 kb on + strand, within PP_0852at 986.179 kb on + strand, within PP_0852at 986.195 kb on + strand, within PP_0852at 986.244 kb on + strand, within PP_0852at 986.244 kb on + strand, within PP_0852at 986.338 kb on + strand, within PP_0852at 986.338 kb on + strand, within PP_0852at 986.939 kb on + strandat 986.939 kb on + strandat 986.939 kb on + strandat 988.137 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
remove
986,025 + +0.1
986,025 + +0.1
986,110 + PP_0852 0.11 +1.2
986,110 + PP_0852 0.11 +0.2
986,179 + PP_0852 0.17 +0.6
986,195 + PP_0852 0.19 +0.2
986,244 + PP_0852 0.24 +1.1
986,244 + PP_0852 0.24 -0.2
986,338 + PP_0852 0.33 -0.9
986,338 + PP_0852 0.33 +0.9
986,939 + +0.8
986,939 + -0.6
986,939 + -0.8
988,137 + -0.3

Or see this region's nucleotide sequence