Strain Fitness in Pseudomonas putida KT2440 around PP_0845

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0842 and PP_0843 are separated by 46 nucleotidesPP_0843 and PP_0844 are separated by 28 nucleotidesPP_0844 and PP_0845 are separated by 8 nucleotidesPP_0845 and PP_0846 are separated by 43 nucleotides PP_0842: PP_0842 - cysteine desulfurase, at 978,551 to 979,765 _0842 PP_0843: PP_0843 - scaffold protein involved in iron-sulfur cluster assembly, at 979,812 to 980,198 _0843 PP_0844: PP_0844 - iron-sulfur cluster assembly protein, copper(I) binding, at 980,227 to 980,550 _0844 PP_0845: PP_0845 - DnaJ-like molecular chaperone specific for IscU, at 980,559 to 981,080 _0845 PP_0846: PP_0846 - DnaK-like molecular chaperone specific for IscU, at 981,124 to 982,986 _0846 Position (kb) 980 981 982Strain fitness (log2 ratio) -1 0 1at 980.196 kb on + strandat 980.215 kb on + strandat 980.215 kb on + strandat 980.215 kb on + strandat 980.564 kb on + strandat 981.106 kb on + strandat 981.106 kb on + strandat 981.106 kb on + strandat 981.111 kb on + strandat 981.111 kb on + strandat 981.111 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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980,196 + -1.6
980,215 + -0.1
980,215 + +0.2
980,215 + +0.5
980,564 + +0.1
981,106 + +0.5
981,106 + -0.4
981,106 + +0.5
981,111 + -0.3
981,111 + +0.9
981,111 + +0.7

Or see this region's nucleotide sequence