Strain Fitness in Pseudomonas putida KT2440 around PP_0815

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0813 and PP_0814 are separated by 3 nucleotidesPP_0814 and PP_0815 overlap by 1 nucleotidesPP_0815 and PP_0816 are separated by 11 nucleotides PP_0813: PP_0813 - cytochrome bo terminal oxidase subunit I, at 951,170 to 953,188 _0813 PP_0814: PP_0814 - cytochrome bo terminal oxidase subunit III, at 953,192 to 953,815 _0814 PP_0815: PP_0815 - cytochrome bo terminal oxidase subunit IV, at 953,815 to 954,147 _0815 PP_0816: PP_0816 - protoheme IX farnesyltransferase, at 954,159 to 955,046 _0816 Position (kb) 953 954 955Strain fitness (log2 ratio) -1 0 1at 953.076 kb on - strandat 953.119 kb on + strandat 954.150 kb on + strandat 954.150 kb on + strandat 955.035 kb on + strandat 955.036 kb on - strandat 955.036 kb on - strandat 955.036 kb on - strandat 955.036 kb on - strandat 955.145 kb on + strandat 955.145 kb on + strandat 955.145 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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953,076 - -0.5
953,119 + -0.2
954,150 + -0.6
954,150 + +0.9
955,035 + +0.5
955,036 - +0.3
955,036 - +0.1
955,036 - -0.4
955,036 - -0.2
955,145 + -0.3
955,145 + +0.5
955,145 + +0.2

Or see this region's nucleotide sequence