Strain Fitness in Pseudomonas putida KT2440 around PP_0722

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0720 and PP_0721 are separated by 79 nucleotidesPP_0721 and PP_0722 are separated by 58 nucleotidesPP_0722 and PP_t69 are separated by 48 nucleotidesPP_t69 and PP_0723 are separated by 20 nucleotides PP_0720: PP_0720 - Peptidyl-tRNA hydrolase, at 837,380 to 837,964 _0720 PP_0721: PP_0721 - 50S ribosomal protein L25, at 838,044 to 838,697 _0721 PP_0722: PP_0722 - Ribose-phosphate pyrophosphokinase, at 838,756 to 839,697 _0722 PP_t69: PP_t69 - tRNA-Gln, at 839,746 to 839,820 _t69 PP_0723: PP_0723 - 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase, at 839,841 to 840,701 _0723 Position (kb) 838 839 840Strain fitness (log2 ratio) -2 -1 0 1at 837.996 kb on - strandat 838.654 kb on - strandat 839.722 kb on - strandat 839.722 kb on - strandat 839.724 kb on - strandat 839.724 kb on - strandat 839.736 kb on - strandat 839.738 kb on - strandat 839.877 kb on - strandat 839.877 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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837,996 - -1.0
838,654 - -0.9
839,722 - -0.8
839,722 - -1.4
839,724 - +0.3
839,724 - +1.7
839,736 - -0.3
839,738 - -0.5
839,877 - -1.5
839,877 - -2.0

Or see this region's nucleotide sequence