Experiment: D-Glucose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0634 and PP_t12 are separated by 71 nucleotides PP_t12 and PP_0635 are separated by 499 nucleotides PP_0635 and PP_0636 are separated by 273 nucleotides
PP_0634: PP_0634 - Fimbrial protein, at 740,843 to 741,253
_0634
PP_t12: PP_t12 - tRNA-Thr, at 741,325 to 741,400
_t12
PP_0635: PP_0635 - Group II intron-encoding maturase, at 741,900 to 743,321
_0635
PP_0636: PP_0636 - Cold shock DNA-binding domain protein, at 743,595 to 744,335
_0636
Position (kb) 741
742
743
744 Strain fitness (log2 ratio) -1
0
1
2 at 740.930 kb on + strand, within PP_0634 at 740.930 kb on + strand, within PP_0634 at 740.930 kb on + strand, within PP_0634 at 740.931 kb on - strand, within PP_0634 at 741.030 kb on + strand, within PP_0634 at 741.030 kb on + strand, within PP_0634 at 741.030 kb on + strand, within PP_0634 at 741.031 kb on - strand, within PP_0634 at 741.031 kb on - strand, within PP_0634 at 741.040 kb on - strand, within PP_0634 at 741.040 kb on - strand, within PP_0634 at 741.266 kb on - strand at 741.266 kb on - strand at 741.266 kb on - strand at 741.310 kb on + strand at 741.311 kb on - strand at 741.311 kb on - strand at 741.311 kb on - strand at 741.332 kb on + strand at 741.360 kb on + strand, within PP_t12 at 741.415 kb on - strand at 741.443 kb on + strand at 741.443 kb on + strand at 741.443 kb on + strand at 741.443 kb on + strand at 741.443 kb on + strand at 741.444 kb on - strand at 741.444 kb on - strand at 741.444 kb on - strand at 741.444 kb on - strand at 741.500 kb on - strand at 743.385 kb on + strand at 743.425 kb on + strand at 743.450 kb on + strand at 743.451 kb on - strand at 743.451 kb on - strand at 743.454 kb on + strand at 743.454 kb on + strand at 743.490 kb on + strand at 743.490 kb on + strand at 743.490 kb on + strand at 743.491 kb on - strand at 743.491 kb on - strand at 743.491 kb on - strand at 743.521 kb on + strand at 743.522 kb on - strand at 743.522 kb on - strand at 743.552 kb on + strand at 743.553 kb on - strand at 743.569 kb on + strand at 743.570 kb on - strand at 743.596 kb on + strand at 743.597 kb on - strand at 743.612 kb on + strand at 743.612 kb on + strand at 743.612 kb on + strand at 743.612 kb on + strand at 743.616 kb on + strand at 743.616 kb on + strand at 743.616 kb on + strand at 743.616 kb on + strand at 743.616 kb on + strand at 743.617 kb on - strand at 743.617 kb on - strand at 743.678 kb on + strand, within PP_0636 at 743.679 kb on - strand, within PP_0636 at 743.679 kb on - strand, within PP_0636 at 743.679 kb on - strand, within PP_0636 at 743.679 kb on - strand, within PP_0636 at 743.706 kb on + strand, within PP_0636 at 743.769 kb on + strand, within PP_0636 at 743.769 kb on + strand, within PP_0636 at 743.848 kb on + strand, within PP_0636 at 743.876 kb on - strand, within PP_0636 at 743.882 kb on - strand, within PP_0636 at 743.882 kb on - strand, within PP_0636 at 743.908 kb on + strand, within PP_0636 at 743.922 kb on + strand, within PP_0636 at 743.922 kb on + strand, within PP_0636 at 743.922 kb on + strand at 743.923 kb on - strand, within PP_0636 at 743.967 kb on + strand, within PP_0636 at 743.967 kb on + strand, within PP_0636 at 743.968 kb on - strand, within PP_0636 at 743.968 kb on - strand, within PP_0636 at 743.968 kb on - strand, within PP_0636 at 743.970 kb on + strand, within PP_0636 at 743.987 kb on + strand, within PP_0636 at 743.988 kb on - strand, within PP_0636 at 743.988 kb on - strand, within PP_0636 at 744.066 kb on + strand, within PP_0636 at 744.088 kb on + strand, within PP_0636 at 744.094 kb on + strand, within PP_0636 at 744.207 kb on + strand, within PP_0636 at 744.208 kb on - strand, within PP_0636 at 744.308 kb on + strand at 744.309 kb on - strand at 744.309 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose (C) remove 740,930 + PP_0634 0.21 +0.5 740,930 + PP_0634 0.21 +0.1 740,930 + PP_0634 0.21 +0.3 740,931 - PP_0634 0.21 -0.0 741,030 + PP_0634 0.45 -0.5 741,030 + PP_0634 0.45 -0.5 741,030 + PP_0634 0.45 +0.6 741,031 - PP_0634 0.46 -0.7 741,031 - PP_0634 0.46 -0.9 741,040 - PP_0634 0.48 +0.0 741,040 - PP_0634 0.48 -0.0 741,266 - +0.3 741,266 - +0.4 741,266 - -1.0 741,310 + +0.1 741,311 - +0.5 741,311 - +0.8 741,311 - +0.2 741,332 + +0.2 741,360 + PP_t12 0.46 +0.6 741,415 - +0.1 741,443 + -0.3 741,443 + +0.4 741,443 + -0.0 741,443 + -0.9 741,443 + -1.2 741,444 - -0.2 741,444 - -0.3 741,444 - -0.2 741,444 - +0.5 741,500 - +0.3 743,385 + -0.5 743,425 + +0.8 743,450 + +0.8 743,451 - -0.2 743,451 - +0.0 743,454 + +0.9 743,454 + +0.2 743,490 + +0.1 743,490 + +0.5 743,490 + -0.1 743,491 - +0.3 743,491 - -0.3 743,491 - +0.1 743,521 + -0.8 743,522 - +1.9 743,522 - +0.4 743,552 + -0.5 743,553 - +0.2 743,569 + +0.2 743,570 - +0.1 743,596 + -0.3 743,597 - +0.2 743,612 + -1.4 743,612 + +0.3 743,612 + -0.4 743,612 + -1.1 743,616 + -0.4 743,616 + +0.5 743,616 + -0.5 743,616 + +0.6 743,616 + +0.4 743,617 - -0.1 743,617 - +0.4 743,678 + PP_0636 0.11 +0.0 743,679 - PP_0636 0.11 -0.6 743,679 - PP_0636 0.11 +0.9 743,679 - PP_0636 0.11 +0.1 743,679 - PP_0636 0.11 +1.2 743,706 + PP_0636 0.15 -0.5 743,769 + PP_0636 0.23 -0.4 743,769 + PP_0636 0.23 -0.1 743,848 + PP_0636 0.34 +0.8 743,876 - PP_0636 0.38 +0.4 743,882 - PP_0636 0.39 -0.6 743,882 - PP_0636 0.39 +0.1 743,908 + PP_0636 0.42 -0.9 743,922 + PP_0636 0.44 -1.2 743,922 + PP_0636 0.44 -0.8 743,922 + +0.7 743,923 - PP_0636 0.44 +0.1 743,967 + PP_0636 0.50 -1.0 743,967 + PP_0636 0.50 +0.5 743,968 - PP_0636 0.50 -0.0 743,968 - PP_0636 0.50 +0.4 743,968 - PP_0636 0.50 -0.6 743,970 + PP_0636 0.51 -0.8 743,987 + PP_0636 0.53 -0.1 743,988 - PP_0636 0.53 +0.9 743,988 - PP_0636 0.53 +0.4 744,066 + PP_0636 0.64 -0.3 744,088 + PP_0636 0.67 -0.2 744,094 + PP_0636 0.67 -0.6 744,207 + PP_0636 0.83 +0.2 744,208 - PP_0636 0.83 -0.7 744,308 + +0.5 744,309 - +0.0 744,309 - +0.1
Or see this region's nucleotide sequence