Strain Fitness in Pseudomonas putida KT2440 around PP_0606

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0603 and PP_0604 overlap by 23 nucleotidesPP_0604 and PP_0605 overlap by 8 nucleotidesPP_0605 and PP_0606 are separated by 14 nucleotidesPP_0606 and PP_0607 are separated by 76 nucleotidesPP_0607 and PP_0608 overlap by 77 nucleotidesPP_0608 and PP_0609 overlap by 4 nucleotides PP_0603: PP_0603 - Isoleucine--tRNA ligase, at 710,203 to 713,034 _0603 PP_0604: PP_0604 - Lipoprotein signal peptidase, at 713,012 to 713,542 _0604 PP_0605: PP_0605 - peptidylprolyl isomerase, at 713,535 to 713,972 _0605 PP_0606: PP_0606 - 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, at 713,987 to 714,934 _0606 PP_0607: PP_0607 - putative Type IV pili biogenesis protein FimT, at 715,011 to 715,493 _0607 PP_0608: PP_0608 - putative type 4 fimbrial biogenesis protein, at 715,417 to 715,785 _0608 PP_0609: PP_0609 - conserved exported protein of unknown function, at 715,782 to 716,426 _0609 Position (kb) 713 714 715Strain fitness (log2 ratio) -1 0 1at 713.500 kb on + strandat 713.500 kb on + strandat 713.639 kb on + strand, within PP_0605at 715.200 kb on + strand, within PP_0607at 715.283 kb on + strand, within PP_0607at 715.408 kb on + strand, within PP_0607at 715.467 kb on + strandat 715.468 kb on - strandat 715.468 kb on - strandat 715.476 kb on + strandat 715.476 kb on + strandat 715.477 kb on - strandat 715.523 kb on - strand, within PP_0608at 715.524 kb on + strand, within PP_0608at 715.524 kb on + strand, within PP_0608at 715.525 kb on - strand, within PP_0608at 715.525 kb on - strand, within PP_0608at 715.525 kb on - strand, within PP_0608at 715.525 kb on - strand, within PP_0608at 715.671 kb on + strand, within PP_0608at 715.671 kb on + strand, within PP_0608at 715.672 kb on - strand, within PP_0608at 715.672 kb on - strand, within PP_0608at 715.835 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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713,500 + +0.3
713,500 + -0.1
713,639 + PP_0605 0.24 -0.2
715,200 + PP_0607 0.39 +0.0
715,283 + PP_0607 0.56 +0.3
715,408 + PP_0607 0.82 +0.5
715,467 + +0.1
715,468 - +0.0
715,468 - -0.4
715,476 + +0.2
715,476 + -0.8
715,477 - +0.3
715,523 - PP_0608 0.29 -1.3
715,524 + PP_0608 0.29 -0.3
715,524 + PP_0608 0.29 +0.7
715,525 - PP_0608 0.29 -0.7
715,525 - PP_0608 0.29 -0.2
715,525 - PP_0608 0.29 -0.3
715,525 - PP_0608 0.29 +0.5
715,671 + PP_0608 0.69 +0.2
715,671 + PP_0608 0.69 -0.0
715,672 - PP_0608 0.69 -0.1
715,672 - PP_0608 0.69 +0.0
715,835 + +0.7

Or see this region's nucleotide sequence