Strain Fitness in Pseudomonas putida KT2440 around PP_0604

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0603 and PP_0604 overlap by 23 nucleotidesPP_0604 and PP_0605 overlap by 8 nucleotidesPP_0605 and PP_0606 are separated by 14 nucleotides PP_0603: PP_0603 - Isoleucine--tRNA ligase, at 710,203 to 713,034 _0603 PP_0604: PP_0604 - Lipoprotein signal peptidase, at 713,012 to 713,542 _0604 PP_0605: PP_0605 - peptidylprolyl isomerase, at 713,535 to 713,972 _0605 PP_0606: PP_0606 - 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, at 713,987 to 714,934 _0606 Position (kb) 713 714Strain fitness (log2 ratio) -1 0 1at 713.500 kb on + strandat 713.500 kb on + strandat 713.639 kb on + strand, within PP_0605

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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713,500 + +0.3
713,500 + -0.1
713,639 + PP_0605 0.24 -0.2

Or see this region's nucleotide sequence