Strain Fitness in Pseudomonas putida KT2440 around PP_0601

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0599 and PP_0600 are separated by 245 nucleotidesPP_0600 and PP_0601 are separated by 250 nucleotidesPP_0601 and PP_0602 are separated by 118 nucleotides PP_0599: PP_0599 - paraquat-inducible protein B, at 704,524 to 706,824 _0599 PP_0600: PP_0600 - 30S ribosomal protein S20, at 707,070 to 707,348 _0600 PP_0601: PP_0601 - lipid II flippase, at 707,599 to 709,137 _0601 PP_0602: PP_0602 - bifunctional riboflavin kinase / FMN adenylyltransferaseFMN adenylyltransferase, at 709,256 to 710,206 _0602 Position (kb) 707 708 709 710Strain fitness (log2 ratio) -1 0 1at 706.653 kb on + strandat 706.653 kb on + strandat 706.654 kb on - strandat 706.827 kb on + strandat 706.827 kb on + strandat 706.827 kb on + strandat 706.828 kb on - strandat 706.834 kb on - strandat 707.013 kb on + strandat 707.014 kb on - strandat 707.014 kb on - strandat 707.501 kb on - strandat 709.224 kb on + strandat 709.224 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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706,653 + -0.5
706,653 + -0.5
706,654 - -0.2
706,827 + -0.2
706,827 + +0.2
706,827 + -0.1
706,828 - -0.7
706,834 - -0.1
707,013 + +0.0
707,014 - +0.1
707,014 - -0.1
707,501 - +0.1
709,224 + -0.3
709,224 + +0.3

Or see this region's nucleotide sequence